RNA id: XM_034312564.1


Basic Information

Item Value
RNA id XM_034312564.1
length 4494
RNA type mRNA
GC content 0.42
exon number 7
gene id pcyox1
representative True

Chromosome Information

Item Value
chromosome id NC_047611.1
NCBI id CM018557.1
chromosome length 24879021
location 20702515 ~ 20711026 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AATAACTTCTAAAATTCTGTACAAATACGATCAGTTTTAATCAGTTTGTTGCTGGAAGCGGTTGGGGAATATCCCAGCGCAACAAAAGACAATATTTTTCTGCTTTAGAGGTAGTTATTTAGgtGCTTATACCTGTGAAGATCTAAACCCTCATCATGTCTATGAGAACCCTAGCGTTCAAGGCTCTTCTGTTCCTTGTGCTTTGTCAGGCTGGACAGCAGGGTCTAGCCTCTGCCTCTGAGCAACGAGAACCTCCAAAGAAAATTGCCATCGTCGGAGCTGGGATTGGAGGAACATCAGCAGCTTATTTTCTCAGGCAGGAGTTTGGACCCAGCGTCAAGATCGATGTGTACGAAGCAGGCACTGTCGGAGGACGTCTCGCTACGGAGAACATTGACGGACATGATTATGAAACGGGAGGCTCCCTGATACACCCGCTTAATTTGCATATGAAGCACTTTGTGGATAGACTAGGTCTGTCATTTCGTGCTGGAGTCCCTTCAAAAATGGCCATCTTTGACGGGAAGGGTCTGATGTTCGAGGAGAGCGATTGGTTCATCGTGAACTTCCTGCGCATGCTGTGGCACTACGGCTTCAACTCACTTCGCATGCACATGTGGGTGGAGGGGATTCTGGACAAGGTCATGAGGATTTATCAGTACCAGCAGTTCGGCTACTCGTTCTCGAGCGTTGAGCGACTGCTGCATGCCATGGGCGGCGACGAGGTTCTCGCTCTGCTCAACCAGACGCTGGAAGAGGCCATGCTGGCTCAGGGCTTCTCTCAGGCCTTCATCAATGAAATCGTCACCCCGATATCACGTGCTAGTTACCACCAGTTACCAGCAGCTTTTAATTTCTCCTGCGCAGGTTCCGTGGCCCTGTCGTGCGCTGACTCGGGCCTCTGGGCTGTGGATGGAGGTAATAAGAGAGTCTGCTCTGGGCTTCTGTATCACAGCAAAGCCGAACTCATTCCAGCACGTGTGACCAACATCGCTATCAAAACGAGGCCCTCTAAAAGCGGCACCATCGCAAACTTTTATGAAGTGAACTACGTTGGTGATTCTGGCTCCGCCCACTCCCTTTACGACATTGTGGTTTTGGCCACGCCCCTCCACCAGGGTTTGTCTGATATCAGTTTCTCAGGCTTCTCTCCTTCCCTGCCTTCACACTTTCCCGGGGCCTACCACCAGATAGTGACTACGCTAGTGCTCGGGCGTCTCAACGTCTCCTACCTGGACGCCAGACGGAATCCGAGCGAGTTTTTCGTCTCTGACATTTTAATGACGGAAAATGAGAATCTGGGCATCGCCAGCTTGAACTTCCTGGACCCTGTCCACATCACACCAGGCTACTCACGCCCTCCGGCCAGCCAGCCAGCAGTGTGGAAGGTTTATTCTACCGAGCCCCTGACGGAGGAGCAGCTGAGGATGCTGTTCGTCTCACGAGAGCGTGTCGTGGAGAAGAGCTGGCTGGCGTGTCCTTCATACAGAGCGCCAGAGCGTCAAGCTCCAAGCTTCATCCTCCACCACAACCTCTAttacctcaaccccattgagtgGGCAGCGTCGTCGATGGAGATGAGCGCCCTCTCAGCGCGAAACGCAGCGCTGCTCGCCAGCCATCGCTGGCACGGAGACACGTCGAAGGTGGATCAGGAGGATCTGCACGCTCGCCTCCGGGGGGAGCTGTAGAGATGCAAGAGGCACTTTTACCAATGAGAATCTTGAAATCTACACTCCACTGGCTGTTTgagtgaattgtgtgtgtgtgtgtgtgtggtgtttttaatTTGATGAAAAAGGTGATGCTAATTATCATAACATCCAAGGAGGCTTTCCATTCTAAtttcttttctgttgtttttcagcaaatCATTAGTTTCTTGGACTTTCTTAGAAGAAAGTTGACTTATAAAGACAACTTTAAAATTCTTTCCCAACACTAGAGAAGTCTTTTAGAGATAAAGCTACAGGAGCAGTTCGACCTAAATAATTCCCTCCCCTTACCCAGCTGCTGTCAGTCATCATTTAGTTTTTGCACTGAAgcagtatacactatatggccaaaagtttgtggacacctgaccatcacacccctgTGTGGTTCTTCCTTAAACCGGttccacaaagttagaagcacacaatgcATGTGATGTCTTTACAtattctgtagcattatgatttctcttcactggaacgcAAACCTGTTCCAACACGACGAtatccctgtgcacaaagcgagctccaggaagacatggtttgccaaagttggagtggaagaactcgagtgtccacATACTGTGGATAATATAGTGTCAACCGCTAATAATAGGGTTGTAAGTGAAGGTTCATAGGGCATCtgtttgaatgaatgagaggtttttactttcgTTTCATCCTCCACATGGTTTACATATAAGGAATAGGAAGGTAAAGACGAAGCTTCCAAATAACAGATAGACAAACAAACACCTATGTAACCAACTCAAATATTCAGGTTCTTCACACCATCCTTGTAGATCAGTATAATAAGACAGAAGAAATTGGAATGTATTGCCTCCATGGACTGTTTTTAAGTTTAGTAAGTGATACTAATTTGTAAAGAGGAGGTAGTCTATAAGGGCTAAAATGCTTTGGGTGAAATACTCAGGCCACTTTCATTCTACTTTATATTACTTATCTTACTAAACAAACACTTTATAATACAGATTAGATGAAACACTGCAAAATCCTTTTTAAGTGATTTCTAATGAACTTCCTCTTGGCCTGATGGACTTGCAGCGAAACACTCCTTTAATATACACAAGCACCGGTTAATAAAAGCAAGAATCCGCACAGATGACCTTTTAACCTTGTTGTTTGGTCACGCTATAAGGCCATTTTTTAACCACTTCCCCTGTGTTGCTTCTGCTTTTACTGAAAAGTAAGCTACAGTGGCCGTGTTGATTTATGCGTTTTCTAGATACGTAAATTTGTTTTTGACTTTTCGAGATGTTTTGCTGAGATGTTaagcattaatttaaaaacaatccTTACTAAGAAATACAATTATACAACTAGACATTTGCAAATAGCTGGTTATAATCCACAACATTCATAACCATCAAAGATATTCTTCTGATTCCAAAATTGCAAACTGTGACACCCCAAAGTGTAAATGTGCTGCACTACTTCTTTATTATACttctgtatagtcagtgttatagagttaacaagcgaatatgtctgtatgttgattgatctaagtgctactttgtttaccgctgatgctgtgagcagccatgttgctttgatgtcacttgctgaactcggactTGAGGAGACCGTCCGGAGTTCTCGTGGAGGAATTTAGAGTCGAGGGGGTGTTTTCTGATGTCTTAAGATGCAGTAATGCTCTGTTTTTAATAGTCATTTATCTGTTAAAAAATGCAGATTCATGTAAAACACATGAAAGGATGCAGATATCAAACCAGCTTCCGCTGGCAGTTCATCAAATTTAACCTTACCTTTAAAACTCACAAAAGAAAGGCGGGacttcataataaaaaaaaaaaatcaaaattgattaaatactaattaataCCTAGACTAGTGGTCACATGACACTTTTGTCTTCTTGATATCTTTTTCCACAGTTGCAAAAAATAGCATTAGCTGTTCACTGAACCACACTGAATCACAACACTATCAGAATAAACTGCTGTATAGGTGAACCTTTGTTTCCATTTGTTTCCCAAATCtcgagtctgattggtcagatgttggtcaggtgttgattaattttctataacagcagctctgactgtatttcctactgcaaggcaaatcacttCTTCCAATACATCTAAtaatgtttctgtagtaacagctaaagtgaaggaacaactgtttatagctgttatgacgtaagtgataacaggaactaactcgttttgTGTTGTGGGCGTTCCAcaaaaagtaactataaacagataaaaaaaaaaaacaacaaatatcaTACCAccctgtttttgattttttttttcttccagttaTTTTTACCCTTAATGAGTTTTGAATGATCAGTACGTCGTAAATGTCCTCTAACCGAAGGTATAAAGGACGTGATTGTATGTGAAATGGACCTTTTTCTCCAAGGGTGTAGCAGAGAGAAGGTCCAGTGTGACCACTGCTTGAGAATTATagtttttgtaatgaaataaaactaaaattataatgtataaacaaCAGATCAGTCGTAATTTAACAGTAATGGTTCCCACGTtgtttttcctgaactgaactAAAGTGCCAGAAATGTATTCAATTCTttctataacacactgtatcaGTATGAAACAACACTCAgtgttaaaatacacaaaaagaagCCGTTTGtgttcttatttctttttttaccaGGGAGTGTCTACAGCACTGAGTGTCTATTATGTGGATTATGTTTTAACAAGGGTGtgatttgtattcattttagtcttgaagttaaaaaaaaaaa

Function

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0030328 prenylcysteine catabolic process biological_process
GO:0001735 prenylcysteine oxidase activity molecular_function

KEGG:

id description
K05906 PCYOX1, FCLY; prenylcysteine oxidase / farnesylcysteine lyase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU322835 lncRNA upstream 42221 20565033 ~ 20660294 (+) True G272427
TU322832 lncRNA upstream 138451 20562176 ~ 20564064 (+) True G272426
TU322739 lncRNA upstream 254837 20442699 ~ 20447678 (+) False G272360
TU322859 lncRNA downstream 5485 20716511 ~ 20737500 (+) True G272450
TU322887 lncRNA downstream 38335 20749361 ~ 20749647 (+) True G272470
TU323226 lncRNA downstream 216596 20927622 ~ 20931583 (+) True G272770
TU323264 lncRNA downstream 279317 20990343 ~ 20990551 (+) True G272803
TU323409 lncRNA downstream 648523 21359549 ~ 21361642 (+) False LOC113544125
XM_026942866.2 mRNA upstream 4852 20684972 ~ 20697663 (+) True gmcl1
XM_034312907.1 mRNA upstream 32028 20663103 ~ 20670487 (+) True snx24
XM_026942813.2 mRNA upstream 41420 20647809 ~ 20661095 (+) True loxa
XM_026942814.2 mRNA upstream 43890 20647807 ~ 20658625 (+) False loxa
XM_026942697.2 mRNA upstream 78574 20608815 ~ 20623941 (+) True mpx
XM_034312698.1 mRNA downstream 39147 20750173 ~ 20761668 (+) True stard7
XM_034312699.1 mRNA downstream 39149 20750175 ~ 20761668 (+) False stard7
XM_026942488.2 mRNA downstream 133299 20844325 ~ 20864249 (+) True smarcad1b
XM_034312293.1 mRNA downstream 133676 20844702 ~ 20864250 (+) False smarcad1b
XM_026942788.2 mRNA downstream 153539 20864565 ~ 20870543 (+) False ska1
TU322810 other upstream 159561 20540325 ~ 20542954 (+) True G272408
TU322768 other upstream 273372 20423399 ~ 20429143 (+) True G272374
TU322750 other upstream 303568 20398280 ~ 20398947 (+) True G272367
trnae-cuc_36 other upstream 853689 19848755 ~ 19848826 (+) True trnae-cuc_36
XR_004579782.1 other upstream 872247 19825962 ~ 19830268 (+) False LOC117599326
TU323423 other downstream 765086 21476112 ~ 21478880 (+) True LOC113543995
TU323909 other downstream 1658248 22369274 ~ 22374875 (+) False tmem230a
XR_003404475.2 other downstream 1911402 22622428 ~ 22665570 (+) True lrrtm4l1
TU324289 other downstream 2414341 23125367 ~ 23129320 (+) False lhx6
TU324492 other downstream 2554427 23265453 ~ 23274170 (+) False rc3h2

Expression Profile