RNA id: XM_034312575.1


Basic Information

Item Value
RNA id XM_034312575.1
length 4025
RNA type mRNA
GC content 0.54
exon number 22
gene id tjp2a
representative True

Chromosome Information

Item Value
chromosome id NC_047611.1
NCBI id CM018557.1
chromosome length 24879021
location 24733548 ~ 24749451 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TAAAATGGGATTTGGGATTGCCGTCTCGGGCGGAAAAGACAATCCGAATGAAGAGACGCGAGAGGCGTCGATCATCATCTCTGACGTGCTGCCGGGAGGACCTGCTGACGGCCTGCTGTTtCAGAATGATCGCGTGATCCAGGTGAACAACTCGTCCATGGAGAACGTTGTGCACTCGTTTGCTGTACAGACTCTACGCAAGTGTGGCAAAGTCGCCAAGATAACAGTGAAAAGGCCGCGTAGACTTCCTGTGGGTGTGGTGAAGCAAGCCCCGCCCCCGGAGGACCGCGTCTTCAATCATCCGGACTACAGCGATGATTACGACTATGAGCCGGACCGACACAGCACCTTCAGCGGACGCACCGACTCCGAGTACGACTACGAGCGTAGCCGTGGCCGAATGCTGGAACGAGACGCCAGTCCTGAGCGTCAGTATCGCCGTGACGGCAGCCGAGGACGCATGCTGGAGCATGAACGCAGCCCTGACCGCCGTTACCGTAGCGAGCGCACCCTTGACCGAGACTACAGCCCAGATCGCCGGTACCGCAGCGACCGCACCTTAGACCGCGACTATAGCCCGGACCGCCGTTACCGCAGAGAGCACAGTCCCGATCGCCGGTACCGAAGCGAAAACGCTCTGGATCGAGACTACAGCCCGGATCGCCGTTATCGCCGTGAAAATGTTCAGGATCGCTCACACAGTCCAGAACCGCACTACAGGGAGAGAGAACCGCGTATTCCAGAGCCACGTCCAGCTGAGGCGCTCAGAAGAAACGCCAGCCGTGAGCGCTTAGAACGCTCACCTCCACAGAGCCCACACGAGCCGCTGGAGAAACCAGTTCGCGTCCTACTGCAGAAGAACAGACCTAATGAAGaatATGGCCTGCGTTTGGGCAGTCAGCTGTTCATTAAAGAGATGACTACTACAGGACTGGCCTCCAGAGTCGGCAGCCTGCACGAGGGAGACATCATCCTGAAGATTAACGGGACTGCCACAGAGAATCTGTCCCTGAGTGATGCGGGGAAGCTGATTGAAAAATCACGAGGAAAACTGCAGCTGGTGGTCCAGAGAGATCGCAGGAAAGTTCTGGTTCGGGTCCCGCCCATGGCTGACAGCGATTCAGAGCCGGACGATCTGTCTGAGATCGAGTCGTATCGTTCATACTCCCCTCAGGACGACAGACGAGGACAGCACTCGGACAtctcctcacactcctccaATGAGAGGCTGCGTGAAAAAAACAGggacGAGCCTCAGAACAGATTGTCTAAAATGGGTGCGATGCCGACGCCATTCCAAGCTGCTCCGGATGATTTTCCACCTCCACCAGAGGAGGAAGACGAGCTTGAGATTGAGGACGCTCCAGctCCTGTGCCCATGCCTGCACCTAAACTCAGCGTTCCACCAAAAGTTAAAGCTCTTCCAAAGGTTCCTCTGAAACCGAGCACAGAGGACCTGGAGATCTATGGGCCAAACACGGTGATGGTGCGCTTTCAGAAGGGTGAGAGCGTGGGTCTGAGGCTGGCAGGAGGAAACGATGTGGGGATTTTCATAGCCAACGTTCAGGAGGACAGTCCAGCGGAGGTGGAGGGTCTGCGGCCTGGAGACCAGATCATGAAGGTGAATAACATGGATTTCCGTGGCATGGTGCGTGAGGACGCCGTGCTCTACCTGCTCGAAATTCCTAAAGGAGACGACGTCACCATCCTGGCACAGAGCAAACCGGACGTGTATAAGGACATCGTGGCGTCGGGTCGAGGAGATAACTTCTACATCAGAACTCATTTTGACCACGAGAAAGACTCTCCTCAGGGTCTGTCCTTCAGCAGAGGCGACATCTTTAAAGTGGTGGATACGCTGTACGACGGAAAGCTGGGCAGCTGGCTCGCCATCCGCACCGACCGAGACAACCAGCTGCAGGAGAGAGGCGTCATCCCCAGCaagagcagAGCTGAGCAGATGGCCAACGTACAGAACGCCCAGAAAGGAGCAGCCAATGACAGAGGAGATTTCTGGAGGCTCAGAGGTCAAAGGGCAGCAAAGAAGAAGGACCTGCGTAAGAGCAGAGAGGATCTCACAGCCAACCCCGTCACCACTCGCTTCCCCGCCTACGAGAGGGTGGTTCTGAGAGAGGCTGGGTTCCGGAGGCCCGTGGTTCTGTTCGGCCCAATCGCTGATGTGGCGTGTGAGAAACTCGGCAACGACCTGCCTGAAGATTTCGTCATCGCAAAGAGAGAACCTAAAGATGCAGGAACAGAGAAGTCCTCAGGTGTGGTGAGACTGAACACTGTGCAGCAGATCATCGAACAGgaTAAGCATGCTTTGCTGGACGTCACCCCGAAGGCAGTGGACACTCTGAACTACACCCAGTGGTACCCCATTGTTGTGTTCCTGAACCCGGACAGTAAGCAGGGCGTGAAGACGATGAGGAACCGCCTGGCACCGGGTTCTAACCGCAGCTCACGCAAACTGTACGAGCAGGCGGTGAAACTGAAGAAGACCTGCTCTCACCTCTTCACGGCGACGGTGGATCTGAACTCGGCTCATGATGCCTGGTACGGGAGTCTGAAGGACACGATTCAGGAGCAACAGAACAAAGCGGTGTGGGTCTGCGAGAGTAAACTGGACGGCACTGAGGAGGACCTGGACCTCCACGATGACCGCATGTCTTACCTGTCGGCCATGAGCGCAGATTACCTGAGCATGGACAGCCGTCTTACCGGGGACTACGACGACACGGCGGATGAGGGCGGAGCCTATACGGATAACGAGCTGGACGAGACGACTGATGAGCCGCAGGTATCGGGGACGAGCCGCTCCTCAGAGCCTGCAGACGAGAGACCCGCCCCCGTGCCCCGCATGAAACGAGCCGGGAGCAGAGAAGTGCTGCGAGACCCCAGTCCCCCTCCATCCTTCGTCCCAGAGCCGCCGAAGgttcgATCTCAGCGGCAGGGCAGTGAGTCCGGCAGCACGGTGAGCAGTGACGTCAGCACCAAGCCGCCGCCGCCTCCCGTCGCCCTCAAACCCAGTTTCCTCGCTCGAGGGGCTCCACCTCAGGAACCCGCCACAGGTACTGAAGATCCTGCCAGCCGCTCGTTCCTGGGCAAAGTGAAGGCCTTCGAGCAGATGGATCACCTCGCCCGAGCACAGAGGATGCTGGAACTGCAGGAGGCTGAACACGCCCGgTTGGAGATTTCTCAGAGACACCCGGACATTTACGCCGTCCCCGTGAAACCGAAGCCCGGGGCCACGCGGCCGCCGCCTGTCGGCTCCAGCTCGAACCCTGTGGCTCGCGGTGGATCTGCTGAAGACGCTGATCCGTCTCGTCGTGGATATTTCAACCCTCAGAAATACAATGACACGGAGCTGTAGGACTCCAGCGGCttccactcctcactcctcataGTGTTTCAGGATGGAtcctggttctggttctggttctgagAAACATTCTGACCTGCAGACCTGTCAGTCAGTGTGACGgctttaaataaactaaaactcTTATTcagatgaaattaaatgaagcAGCGTTACtacaaaaaatactaaaaatagtcttttctgctttttttttttaatatttgtacaCTTTTATAAGAAACTGAAAGATGCGACGGATGTTTGTTTAATGTAGTGAATCGACTCGACGGTTGTGttacgtgttttattcctctgcaGGATCCCTACAGTTTCTTACTCGCTAAAGCTCACAGCAAAACCAACGACGGATTTTAAACCTGAGCTTCAAGACGGAAATGTCATGAGATTGAAATTTTCTACACTTATATCCCTTATAACCTTCACACTCTTTTTTGGAAGAGGTATCTTTTATtgtgttaatgaataaaatcacatacattcACATACTGCATCTGGATGTgcaatgtatttaaaaaaaaaaatggtaatgatgatgattcGTAAGGTCCGAGCTATTTCTGCGTGTTTCTAATCATCTTCCTGTAAATGTGGAAAATCAACCTTTAACATTcagatatataataaataaataaaacacaaa

Function

GO:

id name namespace
GO:0005923 bicellular tight junction cellular_component

KEGG:

id description
K06098 TJP2, ZO2; tight junction protein 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU325645 lncRNA downstream 14417 24718931 ~ 24719131 (-) True G274841
TU325639 lncRNA downstream 37437 24694573 ~ 24696111 (-) True G274837
TU325596 lncRNA downstream 54790 24657290 ~ 24678758 (-) False G274808
TU325589 lncRNA downstream 57043 24657290 ~ 24676505 (-) True G274808
TU325597 lncRNA downstream 60486 24657290 ~ 24673062 (-) False G274808
TU325669 lncRNA upstream 194 24749645 ~ 24749854 (-) True G274856
TU325670 lncRNA upstream 5729 24755180 ~ 24755382 (-) True G274857
TU325671 lncRNA upstream 30668 24780119 ~ 24780386 (-) True G274858
TU325672 lncRNA upstream 31510 24780961 ~ 24781675 (-) True G274859
TU325666 lncRNA upstream 50006 24799457 ~ 24803481 (-) True G274853
XM_034312447.1 mRNA downstream 15313 24698791 ~ 24718235 (-) True mamdc2b
XM_034312446.1 mRNA downstream 35696 24658808 ~ 24697852 (-) True smc5
XM_026942651.2 mRNA downstream 223988 24500862 ~ 24509560 (-) False sgtb
XM_026911830.2 mRNA upstream 11765 24761216 ~ 24777827 (-) True pip5k1ba
XM_034312576.1 mRNA upstream 44103 24793554 ~ 24797730 (-) True actr1
XM_034312377.1 mRNA upstream 56971 24806422 ~ 24808492 (-) True zgc:86599
XM_026911816.2 mRNA upstream 61352 24810803 ~ 24844734 (-) False LOC113525332
XM_026911817.2 mRNA upstream 61352 24810803 ~ 24827597 (-) True LOC113525332
TU325248 other downstream 432544 24297481 ~ 24301004 (-) False LOC113544170
TU325209 other downstream 480242 24251603 ~ 24253306 (-) False inip
TU325032 other downstream 870280 23861998 ~ 23863268 (-) False nrarpa
TU325027 other downstream 931264 23798359 ~ 23802284 (-) True G274342
XR_004579778.1 other downstream 3526378 21189969 ~ 21207170 (-) False LOC113544130

Expression Profile