RNA id: XM_034312576.1


Basic Information

Item Value
RNA id XM_034312576.1
length 2254
RNA type mRNA
GC content 0.48
exon number 8
gene id actr1
representative True

Chromosome Information

Item Value
chromosome id NC_047611.1
NCBI id CM018557.1
chromosome length 24879021
location 24793554 ~ 24797730 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

gtgtgtgtgtgcaggaacaCAGGGGTTTGTTGTCGGTTCGGTACCCGATGGAACATGGCATCGTTAAAGACTGGAATGACATGGAGAGGATCTGGCAGTACGTTTACTCTAAAGAACAGCTGCAGACCTTCAGTGAGGAGCACCCTGTATTACTGACTGAAGCTCCTCTGAACCCGAGTAAGAACCGCGAGCGTGCAGCTGAGGTCTTCTTTGAAACCTTCAATGTCCCGGCACTGTTCATCTCCATGCAGGCCGTGCTCAGTCTgtatgcgACAGGCAGGACAACAGGTGTGGTGTTGGATGCGGGGGATGGTGTGACCCACGCCGTCCCGATCTACGAGGGTTTTGCGATCCCACACTCCATCATGCGCGTGGACATTGCGGGCCGGGACGTGTCCCGATTCCTCCGTCtgctcctgaggaaggagggaTACGACTTTCACACCTCCGCTGAGTTCGAGGTCGTGCGCACTATCAAGGAGaggGCGTGTTATCTGTCCTTGAATCCTCAGAAAGATGAGACTCTGGAGACGGAGAAGGCGCAGTACACACTACCGGACGGGAGCACACTCGACATTGGGCCAGCGAGGTTCCGGGCCCCGGAGCTGCTGTTCCGGCCCGACCTGATTGGAGACGAGAGTGAGGGAATCCACGAGGTTCTCGCCTTCGCCATACAGAAATCAGACCTGGACCTCCGGCGTACCTTGTTCTCCAACATCGTCCTGAGTGGCGGCTCCACGCTGCTCAAAGggttTGGAGACAGATTGCTGAGTGAGGTGAAGAAGCTCGCTCCCAAAGACGTCAAAATAAAGatctCAGCACCACAGGAGAGACTTTACTCTACATGGATTGGtggctCTATCCTGGCTTCATTGGACACCTTTAAGAAGATGTGGGTTTCTAAGAAAGAGTATGAAGAGGATCGAGCACGTGCCATTCACAGGAAGACCTTCTAATAAGCCCCGCCCATCGCTTCAGTCATGCCCCGCCCCCTCCAGCTCTGACACTGCGGCTGATAGGGAGTGTCTGTGCagttctgatctctctctctcacacacacacacacacacacacacacacacacactctctctcttatgTCCTTCAGCTTGTCTGTGTGTTCTGGTCTAAAAtgaaggatttttttctgtaatttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtttgtgtgtgtgaggggtgttaTTGCCACTCCAGTGATGTCGGTCAGCTCTAGGCCACGCCCTGTGTTGTTAGGCAGGAAGTGATGACAGGACATGGTGGtaaacacatccacacacacacatgtggttcactctcacttacacacacacacacacacacacacacacacacacacaccccacttgCACACTAATCACCACTGTGTTTTTCCTCTGCACTGCGCACGAATgctagcctgttagctagctagcagagTGTGAGGtatccacttcctgtttctttccTGAGGATTGTGTGTTGttcactgaggtgtgtgttagagcacaTCTCCACCTTCAGGACTCCCCATTGTTATTCATTATGTTGTATGTacctgtggttttttttttattttattttatttttttggggggggtcTGTTATGTAACTGgaggtgggtgtgtctttaacACATTGGGTAACCATGATGTATGTGATCATACTGTACCTTTTGGTCGCCCGAATGATATCACCATGGAAACAGCTCCAAACTCCGCCACCGATTTACGCTACAacggtttgtttttgtttgtttgttttttatttattttgattttgctATGGAAACTTTGTTAGCATTATCCACATAGCCAGTCAGTTTATTGTGGTCACCAGTAAAGCATGTGATATTAACCCCCCCAAACCCCCATTCACATTCTGATTACattccactctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtggtgatagAGCAGGTTTAATGGTTCTGGATTAAGAGATTGACAGTTTGACAGAAAGTCAGAGTAGTGCAGTGTATCATTATAAAGCATCTCAATTTCATTATATTagctttttacacacacacacacacacacacacacagatgactgGTCACAGTGGAGAATAATCTGAAAATGTGGCCAGAGATTTGTTTCAtaagaaatgaaaactgaaatgtgtttcaatttaaaatttctCCTTTACAGACAGAAGCTCTGCACATGAACACTCTTTACTGCTGatgtataaattataaataaattaattaaaagccTCA

Function

GO:

id name namespace
GO:0005856 cytoskeleton cellular_component
GO:0005737 cytoplasm cellular_component
GO:0005524 ATP binding molecular_function

KEGG:

id description
K16575 ACTR1, ARP1; centractin

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU325672 lncRNA downstream 11879 24780961 ~ 24781675 (-) True G274859
TU325671 lncRNA downstream 13168 24780119 ~ 24780386 (-) True G274858
TU325670 lncRNA downstream 38172 24755180 ~ 24755382 (-) True G274857
TU325669 lncRNA downstream 43700 24749645 ~ 24749854 (-) True G274856
TU325645 lncRNA downstream 74423 24718931 ~ 24719131 (-) True G274841
TU325666 lncRNA upstream 1727 24799457 ~ 24803481 (-) True G274853
XM_026911830.2 mRNA downstream 15727 24761216 ~ 24777827 (-) True pip5k1ba
XM_034312575.1 mRNA downstream 44103 24733548 ~ 24749451 (-) True tjp2a
XM_034312447.1 mRNA downstream 75319 24698791 ~ 24718235 (-) True mamdc2b
XM_034312446.1 mRNA downstream 95702 24658808 ~ 24697852 (-) True smc5
XM_026942649.2 mRNA downstream 284176 24500862 ~ 24509378 (-) False sgtb
XM_034312377.1 mRNA upstream 8692 24806422 ~ 24808492 (-) True zgc:86599
XM_026911816.2 mRNA upstream 13073 24810803 ~ 24844734 (-) False LOC113525332
XM_026911817.2 mRNA upstream 13073 24810803 ~ 24827597 (-) True LOC113525332
XM_034312448.1 mRNA upstream 74320 24872050 ~ 24873662 (-) True LOC117599334
TU325248 other downstream 492550 24297481 ~ 24301004 (-) False LOC113544170
TU325209 other downstream 540248 24251603 ~ 24253306 (-) False inip
TU325032 other downstream 930286 23861998 ~ 23863268 (-) False nrarpa
TU325027 other downstream 991270 23798359 ~ 23802284 (-) True G274342
XR_004579778.1 other downstream 3586384 21189969 ~ 21207170 (-) False LOC113544130

Expression Profile