RNA id: XM_034312602.1


Basic Information

Item Value
RNA id XM_034312602.1
length 3810
RNA type mRNA
GC content 0.49
exon number 30
gene id LOC113544765
representative True

Chromosome Information

Item Value
chromosome id NC_047611.1
NCBI id CM018557.1
chromosome length 24879021
location 5664084 ~ 5701178 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ttcccctgcacagcacagcacagcacagcatcCGGGTAGGTAAGGGTTAAATGGCGTGTGGCTTTGGAGGCGGAGGCGCTGCTACATGAGCTCTAAGGTGTTGTGAGCTGGTTAGgaagctgaaaagaaaagagtCAGGCGACTTCGCACACAGCACACGTCCTGAACTAATGGCGTTCCCAAGCCGCTCAAACGTTCAGCTTTAAGCGTTTTCAAGCATCCGTAGTGGCACTTGAACGCAGCATGGAGGAGCAAGCCCATGTTCAGGAGGACCTGGCGAGCCTGGCAGATTTGGATGAGAAGAGTTTACTCGAATCACTGACTACAAGATTCAGCCACAGTCATATTTATACCTACATTGGGGATATTCTGGTGGCTGTGAACCCCTTTAAACAACTCCCACTCTATGGAAAAGAGGTGTCAGAGAAGTACAAATGCCATGagaaaacagctttacctccacATATATTTGCTGTAGCTGATAGAGCATACCAGTCCATGTTAGGCCGTCTGGCCACGGGGCCGAAAAACCAGTGCATCGTCATCAGTGGTGAAAGCGGAGCAGGAAAGACCGAAAGCACAAAGCTTTTATTGCGGCAGCTTATGGAGCTTTGTCGAGCAAACTCTCAGCTCGAGCAGCAGATCCTGCAGGTGAACCCTCTTCTGGAGGTGTTCGGGAATGCCCAAACAGTCATGAATGACAACAGTAGTCGGTTTGGAAAGTATATTCAGCTGCGCTTTCAGAACTCTTCAGTAAAAGGAGCCAAAATCAACGAGTATCTACTGGAAAAGTCCCGCGTGGTCCACCAAGATGAAGGCGAGAGGAACTTCCACATCTTCTACTGCATGCTTGCTGGCATTTCTTCACAAGACAAGGAGATGTATGGCCTCCTGGACCCTAGTCAATACCGTTACCTGAACGGGCAGTTTGGCCAGGGTGATATGGTGCAGCACTGGAGTGAAAAGTACAATGAAGTGAGCAATGCCATGGATATGGTGGGCTTCGAGGAGCAGGAAAAGGTGGACATGATGACTATCCTAGCCGGGATCCTATCTCTGGGAAATATCACGTTCGAGCCAACTGAGAATGACGCCCTGAAAGTGAGCAAAACTTCACAGGGCTGGCTTAAAGCCACCGCGGGTCAGTTTGGTGTTCAGGAGGAGGACCTGATGAGGTGTCTTACCTGCACTATGTCAGTAACAAGAGGGGAATCCATCCACCGCTTCCACAACCAGCAACAAGCTGAAGATGCCAGAGATTCGATCGCCAAAGTGGTGTACGGCAGAGTGTTTGGCTGGATTGTTAGTAAAATCAACGAGCTGCTGGCGCATAAACTGGATACGAATGTTGAGCTGAGTGAAATAGGTATTCTCGACATCTTTGGGTTTGAGAACTTTTCTGTGAACCGATTTGAGCAGCTCTGCATTAATCTTGCAAACGAGcagctacagtatttttttaatcatCACATTTTTCTAATGGAGCAGAACGAATACAAAGAGGAGGGCATCCAGTGGGAGACCATCACCTTCAAGGATAACAAACCAATTCTGGACCTGTTCTTAACGAAGCCGATTGGGATTCTGTCCTTGCTGGATGAGCAGAGTGCCTTTCCTCAGGCCACAGATGGAAACTTTGTAGACAAGCTGAACAGCAAATTCAAAGCCAATCCCCACTTTGAAGTGGTCCGGAGCCATAGTCCTCTCTTTACTGTTGTGCACTACGCTGGAAAGGTGCAGTATAATGCCAGCGGCTTCCTGGAAAAGAACCGGGACAATATTCCAGCCAACATTCGCACTCTCTTCATCAACAGTGTTACACCTCTCCTCAGTGTCCTCTTTGCTGccACAATTTCCAGAACTGGGACATTGATGCCACGGAAAGCAAAgATGGTGAACTTTGTAGATGATAACTTCAACTCGACCAGGAAGCAGTCTGTAGGCACACAGTTCAAGCATTCCTTGGCTGTATTGATGGAGAAGATGTTTGCCGCCAGTCCGCACTTTGTGCGATGCATCAAACCCAACGGCAGCAAGCTGCCCGATCAGGTGGACAGTAAGCTCATCATGGATCAGCTGAGGTACAACGGCCTGCTAGAGACAATCCGCATTCGGAGAGAAGGTTTCTCCTGGCGACCAACTTTTAAAGAGTTTGCACAGAGGTACAACATCCTGCTGCTTAAACCGGATCTGCCTTTGGACAAAGAAAGCTGTATGTCGATTCTTAATACCACAGAGCTGCATGGTTGGAGATGTGGGTCATCCcggttattttttaaatactggcACCAGGATGAGTTGGCCCGTCTCCTAGAGAGGCTTGGGAAGGCTGCTGTTGTCATTCAGAAGAATTACCGTGCGGTGAGCTGTAGGAAAAAGTACTTGGTCCTGCTGGCTGAGGTTAAGAGGCAACAGCAGGCGCAGCGAGAGAGGGAAGAAAGGGAAGAAGAGGAGAGACGGAGGCAGGAGCTTCTGGAAGAGGAAGCGAGGAACAAGCGTTTGCTTGTGGAGCAAGAAAACAAGAGGCCAGTTTCTCCCCCAGTTCCTCTACCCAGGAAGAAGAAACCTCAGCCCAGACCTCGGGCCATACTCGCTGCAATTGCCCTCGCGCCTCATCTAACGCCTGTACCTCGGCCACGCAGTAAGCAGTTTGAGGCGACTCCATTTGATAACGACGTGCAAGAGAACAGTGATTTGATGACCCTTCTGGCTCAGGAGGTGGATGAGGAGTGGGCCAatgagaaaaggaagaagaggagcaaCACTATTCGGTGGTTCAAAGAAACACAGGCCCGCAAAGTGGCCAAAAATGGCACTTTCCCTTGCTGGTTCCATGGCATGATTACTCGGaggcAAGCTGACGATCTGTTGACTGAAAAGCCTCTTGGCTGCTTTTTGATTCGAGTGGGACAAAGTCGAGAAGGATATACACTTACATACAGGGGAGCTGACCGGCTTCGTCACTACATGATCGAGATGCAGAGTAACGGGAAGTACGTGATCCTTGGCGAGGACCGGGCACATGCCTCCCTGATTGAACTGGTCCAATATCACACGCACGTGGGAATCAAGCCCTTTATGGAGCGCCTCACTGAGCCGTGTGGACAGACATGTGACCATGTCCCAGACTATGAAGAGCTGAAGGCATTGCTTGGGCCTGGCCCATCTGACAGCAGCAACACAGACTCGAGAGAGAACAACCATAAAGATACGGACTACGTCCACGTCGAAATGCAGAGGCTCTTTCAGCCCCCGGGACAGACCGCGGAACTGGAGGCTCCGAAAGCCCCTGTCCTGAGGCGCGTGTCGGACAGATACAGACGTGTAGACGATGCTGAGATACAGCAGAAAGGAGACGAGGATGCAGAGAAAGGCAGACCTGTCCCCCGCCTCTACCCTTCCATCCGATTAGCCATGAGGGAGATCCAACAGCAGTTTTCAGCCAACCAAAAGCAAAACTCCGCAACCTCCCAAAACCCCTGGGCACCCTGGAGGAAGAAAGATTCCTAACGGAAGGAAGGATGACaacatgggttttttttttttttttttttttttacatcaaaatgTGAACGGCTGAACTTGCGAGAGGAGGATTTTACGTGAATGGGACTTGAACAAACGGCGGGACGTTCCTCATAAGGCGAacttttagatttttgtttacCAGGGTCTATTTGGATTAGagcttattcattatttttaagtagttatttaatttgtaaattatgTATTTGATGGCATGGGACACTTAATAAACACTGTCTGGTTTTGAATACTACAGCCCAGAGTGCTGGAAGTAATCATAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU312815 lncRNA upstream 90804 5572964 ~ 5573280 (+) True G263993
TU312774 lncRNA upstream 458665 5204995 ~ 5205419 (+) True G263953
TU312598 lncRNA upstream 638576 5023275 ~ 5025508 (+) True G263801
TU312488 lncRNA upstream 777283 4885346 ~ 4886801 (+) True G263716
TU312487 lncRNA upstream 779357 4883327 ~ 4884727 (+) True G263715
TU312825 lncRNA downstream 1665 5702843 ~ 5704831 (+) True G264002
TU312899 lncRNA downstream 221132 5922310 ~ 5926306 (+) True G264056
TU313350 lncRNA downstream 473136 6174314 ~ 6174692 (+) True G264424
TU313337 lncRNA downstream 492896 6194074 ~ 6194681 (+) False LOC113544903
TU313352 lncRNA downstream 493750 6194928 ~ 6195142 (+) True G264426
XM_026943670.2 mRNA upstream 3942 5652719 ~ 5660142 (+) True wu:fb59d01
XM_026943897.2 mRNA upstream 14630 5645871 ~ 5649454 (+) True nxnl2
XM_026943935.2 mRNA upstream 24503 5627430 ~ 5639581 (+) False LOC113544883
XM_034312417.1 mRNA upstream 24503 5627787 ~ 5639581 (+) False LOC113544883
XM_026943936.2 mRNA upstream 24503 5627850 ~ 5639581 (+) True LOC113544883
XM_034312438.1 mRNA downstream 15937 5717115 ~ 5722706 (+) True setd9
XM_034312437.1 mRNA downstream 16815 5717993 ~ 5722706 (+) False setd9
XM_026943849.2 mRNA downstream 17036 5718214 ~ 5722706 (+) False setd9
XM_026943660.2 mRNA downstream 41053 5742231 ~ 5759098 (+) True grk5
XM_026943662.2 mRNA downstream 41053 5742231 ~ 5759098 (+) False grk5
TU312620 other upstream 583467 5077881 ~ 5080617 (+) False triap1
TU311007 other upstream 2846826 2795548 ~ 2817258 (+) False pcp4a
XR_004579857.1 other upstream 3316699 2343661 ~ 2347385 (+) True LOC117599403
XR_004579765.1 other upstream 4244595 1414504 ~ 1419489 (+) False ponzr2
TU313203 other downstream 307622 6008800 ~ 6011902 (+) True G264336
TU313925 other downstream 1365693 7066871 ~ 7082441 (+) True G264948
TU313944 other downstream 1414882 7116060 ~ 7118616 (+) False ddx55
trnar-ccu_6 other downstream 1667302 7368480 ~ 7368552 (+) True trnar-ccu_6
trnam-cau_30 other downstream 1667384 7368562 ~ 7368633 (+) True trnam-cau_30

Expression Profile