RNA id: XM_034312674.1


Basic Information

Item Value
RNA id XM_034312674.1
length 4236
RNA type mRNA
GC content 0.41
exon number 20
gene id LOC113544087
representative False

Chromosome Information

Item Value
chromosome id NC_047611.1
NCBI id CM018557.1
chromosome length 24879021
location 19424147 ~ 19440355 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ATTCAAATGCAAGTGGTGAACTCACAAGTACTCCCTGAaatttcagacatgattgtagagCTACACAGatgaccaaatgattcacttaAGGGAAATACGAGATgtgagCAAGGACATACTAGAATACATTGTAATCGTAGAGGTGAACGTGTCACAAGTGATTTTGTTTGACCAAATCAAATCATCAGCGGAATCCATCAGTCCATTACAAATGGACAACACCACAATAATCAATGGTTTGAACATTACAGCAGTGTGCCAGCCAAATGAATCTGAATACCAGTGCACATGTGAGGATCAGTATGTTTGGTCATACAATAATTGCATTACCTATAACGCCTGTGATAACCTAGATGAAGGAACATGCACTTGTATCCGAGCCATTCCAAGTGATGGACAGGTTTGTGTGTCAAAAAATGaactTCCATTCTTTGTGTTTCTGCTTGAAATTGAGATAAATGCTACAGACATAACAGTGATAGATAAACTGAGAAAACTCCTAGAAACACTCAATTCTTCACTCTCATTTGATGATGTAGTAACAGTCACAGATGTCAACATTACAACAGtgtgcagtttgaatgatactgaatatcagtgcaGGTGTGAGGATCAGTATTTCTGGCCAAATGAAAAATGCACAGTATATGGGGCTTGTGATGACATCACCAATGCCTCATGTAGCTGCATCAACGCTATTCCAAATGACGGACAGTTCTGCCAACCAATCAGTGAGCTGACTACCAACACAACAACTGCtgcaacaacaaccaccacaacTACACCCACTACATCCATAGCCAACACAACAGCTGCTGCAACGACAAGAAACACGACTACAACCACCGAAACTACACCCACTACATCCACAGCCAACACAACAGCTGCTGCAACGACAAGAAACACGACTACAACCACCGAAACTACACCCACTACATCCACAGCCAACACAACAGCTGCTGCAACGACAAGAAACACGACTACAACCACCGAAACTACACCCACTACATCCACAGCCAACACAACAGCTGCTGCAACGACAAGAAACACGACTACAACCACCGAAACCACACCCACTACATCCACAGCCAACACAACAGCTGCTGCAACGACAAGAAACATGACTACAATCACCGAAACTACACCCACTACATCTACAGCCAACACAACAGCTGCTGCAACGACAAGAAACACGACTACAATGACCACAACCACAGCAAAcacaacaaccaccaccagcaccacaccaacaacaacaacaacaacaacaacgaccaCTACCACAACTACAACCACTACAACTACAATCCCCACAACCACAGgCAACCGTGTATTAAGCTTCTCACTGACAATAAATGAAGAATTTGACTTTGACCTTACCCAAAAAAGTAGTACAAAATACCAAacatatgaaacaaaaattaaGAAATCAATTGATAATAGTTACAGAAATGTACCTGGATATCAGCCCAACTCTGCAACAGTTATTGGTTTCAGGTCTGGCAGTGTGATTGCAGACTTCAGTATTACTGCAACAAGTAATAACCTTAGTTTGGCTTCAGCAAACCAACAGCTTGCCAGCAATCTCCGTTCAGCTGGATTGGAAGTGATTGAGTCATCAATCAGTCAAAGTGTGGAAGGTGAACTAATTTCAATCCAGGGCAATATATATCCTGGGACAaatctcacactgaaatgtAAACTTCCAGTGAATAATGGCATAACCTGGACCCTGAAAGGGAATAAATTACAGCCATCagataaatatgtaattaataacactgaactcactgtaaAGAATGCCACTCCCAGTGACAATGGTCAATATGCATGCACAACTACAGTAAACTCTCTGCCCTATGTTATCTGGCAAACCATTACAATTCAGTCATACCCCAATATCCAAGTGAGCAGTGACAAAGTTGTAAAATGTGAGGATACAAAAATCACACTGGAGTGTTGTGTTCAGGTGGTTTATCAAGTAGAATGGAATGACCCTGCAACCTGCGGCTCAACTTCAAAAGGAGGCTGCATATCATGTGActatacaattaaaaaagaGGGCTGCCAGACTAATGAGCAAGTAAAACAGGTCACATGTCAACTAAAACAACCTATCAGTGGAAGTAGTTACAACTCAAAGAgcatcaaaataaaagtcctgaACCAAGaatttacCTGCTCTGACAGTGTATTTGGAGCTGGAAATCTGGGAGATAAACATACTGGTGACTGCAGTGGAGACATGGTTGGCTATCAAGTAGCTCAGTGTAATTCATCAAAGCTTTGGAACCCCATAGAAGACTACTGTGTTCTGCGCGTCTTTCGATATTTAAAAGATGAAACTCAGAATTTACAGGTAACAGACATCCCGCAATTTATGGCCAACCTCAGCAGTAATGCTACGTTACAGACTGAAAACATTATTGACTCTCCGACAACCATAACAACAATAGTAGACATACTAACAGTCATTTCAAATCTCTCACAAACAATAGTCATCAGTCAAACCATTATGACGGATTTCCTAAAAACAACCGACGTCATTGGAACAGAAGGTACATCAGACACATGGGtgtatttaaacacaaacagtacaACAATGAATACCAGTAGTATACTTCTGGACTCGACTGAGCGCATGGCACGCAGACTCCCGAATGAAAGTCTATCAATAACAACAAACTTCTCTTCTCTCACTAAAACTTCCATTACTGCCCCCTTTTCTGGAACATTTGGAAAAAATTCAACTACCCATATAAAAATTCCAGTGACTAGTGCACAGACATTCCTCACAGTGATAATTTCTTCAGCTCTTAACAATATCTTACCTGTTAGAACACTGACCTACAATGACAGCAATCAGACTGGCACCAGCATCAATGGAGATGTAGCCCTAATTGAGACAAACACAACAATTAACAATATCTCCCTTTCTTTTGATGTCAAAAATAAGACACTTGGAAAACCTCAGTGTGTCTTTTGGAACTTTAGTCTTCTGAATGACGTTGGTGGATGGGACTCGACTGGATGTCAACTAAAGACACTGGGGAATGAAATCGAAAGATATACATGTGAGTGCAATCACACAACCTCTTTTTCAATCCTGATGTCACCATTTTCCCTGGATAAAGGCTTTACCATAATCTTAGATTATATAACTTACATTGGTGTGGCCATTTCATTGGCCAGCTTGGTTTTGTGCCTCATCATTGAAATCATTATATGGAAATCAGTGACAAGAAATGACACATCCTACATGCGCCATGTCTCCATAGTCAACATTGCTGTCTCCCTTCTGATTGCAAACATATGCTTCATCATTGGAGCAGCTGTTGTTAACCAAGGAGAGGGTCCCTGCAGTACAGCAACATTCTTCATGCACTTCTTTTATCTTGCCCTTTTCTTCTGGATGTTGCTGTCAGCACTCTTGCTCCTCTACCGCACCCTCATGGTCTTTTCCAGAATGACCAGAGGAGCAATGATGGCCATAGCCTTCACTGTTGGCTATGGAGCCCCGCTAATCATAGCTGTCATTACTGTGGCATCTACAGCTGGAAGCAAAGGATACATTCAAAAAGATTATAATTGCTGGCTAAACTGGAATAAAACGAAGGCCCTCCTGGCATTTGTGATTCCTGCTCTGACTATTGTAGCTATAAACCTCCTGGTGCTTATTGTGGTTCTGTGTAAGATGTTGAGGAGAGGAGTTAATGCTTCCACTCAGCCAGACGAAAAACATCCCCTAATGGTCATTGCTAGATGTGTGGCGATTTTAACACCTCTCTTTGGTCTAACGTGGGGATTCGGCATTGGGACCATGGTGTCACCGAACTTTGGGATTCATGTGGTGTTCGCATTCCTTAATTCACTGCAGGGTTTCTTTATTTTGGTGTTTGGAACATTACTGGACAGTAAGGTGCGAGGAGCATTGGCAGGAACGTTTTCACTGAGGAACTTAAGCTCTAACCGCACCAGGAGCACAAGTGCAGGACCATCATCCTCAAGTGGATTTCCTTTCATTCAGAGGTTACGGCAGAGAAATGTGTACAATGTATCGAACAGCGGCGTTATGTCTTCAACTGCAAGCAATTCATATTCAGCTGTTGACAATAGCTAATACATCCATattataagataaataaaaaaaaatactactaaaGCACACAACAGTTGATTTCAGAATGATGTATAAGGAATGAATTTAGAAttgctttaataaaattatCAGTATAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU322180 lncRNA upstream 89862 19333846 ~ 19335880 (+) True G271884
TU322140 lncRNA upstream 196319 19229061 ~ 19229423 (+) True G271853
TU321792 lncRNA upstream 413510 19011175 ~ 19012232 (+) True G271576
TU321787 lncRNA upstream 461962 18963355 ~ 18963780 (+) True G271571
TU321785 lncRNA upstream 464187 18961302 ~ 18961555 (+) True G271569
TU322221 lncRNA downstream 42142 19482497 ~ 19484904 (+) True G271923
TU322222 lncRNA downstream 49203 19489558 ~ 19494875 (+) False LOC113544004
TU322223 lncRNA downstream 55810 19496165 ~ 19496866 (+) False LOC113544004
XR_004579783.1 lncRNA downstream 376823 19817178 ~ 19825232 (+) True LOC113544143
TU322531 lncRNA downstream 378112 19818467 ~ 19825232 (+) False G272180
XM_034312671.1 mRNA upstream 11115 19376092 ~ 19414627 (+) True LOC113544086
XM_034312672.1 mRNA upstream 19428 19376359 ~ 19406314 (+) False LOC113544086
XM_026942743.2 mRNA upstream 50407 19369830 ~ 19375335 (+) True pbdc1
XM_026942767.2 mRNA upstream 150889 19258631 ~ 19274853 (+) True sfrp1b
XM_026942778.2 mRNA upstream 197819 19182347 ~ 19227923 (+) True loxl2a
XM_034312831.1 mRNA downstream 9450 19449805 ~ 19468222 (+) True LOC117599384
XM_034312832.1 mRNA downstream 44917 19485272 ~ 19489094 (+) True LOC117599385
XM_034312833.1 mRNA downstream 48851 19489206 ~ 19520777 (+) True LOC113544004
XM_034312834.1 mRNA downstream 90522 19530877 ~ 19540276 (+) True LOC117599386
XM_034312298.1 mRNA downstream 100023 19540378 ~ 19549194 (+) True LOC113544003
XR_004579823.1 other upstream 16324 19376097 ~ 19409418 (+) False LOC113544086
TU322206 other upstream 20815 19399598 ~ 19404927 (+) False LOC113544086
TU322151 other upstream 181837 19241709 ~ 19243905 (+) True G271863
trnas-uga_9 other upstream 488772 18936889 ~ 18936970 (+) True trnas-uga_9
trnas-uga_8 other upstream 489754 18935907 ~ 18935988 (+) True trnas-uga_8
TU322526 other downstream 342072 19782427 ~ 19786819 (+) False LOC113543969
TU322527 other downstream 342072 19782427 ~ 19786819 (+) True LOC113543969
XR_003404464.2 other downstream 342225 19782580 ~ 19786831 (+) False LOC113543969
TU322529 other downstream 353557 19793912 ~ 19805795 (+) True G272180
TU322530 other downstream 353557 19793912 ~ 19805795 (+) False G272180

Expression Profile