RNA id: XM_034312682.1


Basic Information

Item Value
RNA id XM_034312682.1
length 4014
RNA type mRNA
GC content 0.49
exon number 21
gene id aak1b
representative False

Chromosome Information

Item Value
chromosome id NC_047611.1
NCBI id CM018557.1
chromosome length 24879021
location 18983133 ~ 19010793 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TACGCGGATTGCGTACTGACAGCTAGTATTTGTCGCTAGATTTGcgacattgattttttttcttccccccaACAGAAATGAAATCTGTTAATCCTAAAATGAACCTTTAGTTTAAAAATTCGCGTCTGCCGATGGAAATCGTCAGCGCTGTACATATCATTATTTTTGCAATGATTTTCTCGGGGTAGCTGCACAGGCTAAGCTAAGATAATAGTTTAGTCCACATCAGTCCGTTCTATAGCGGGTTAGCTTAGCTGGTTTGGATTAGCcagtttgtatatttttgctCCTTCATTTTATTAACGCCCGTTAAAATAATGCTAGTGATGCATGGTTATGTTGCACCGTGATATGGTGTAcagctgtgtttactgctgcgttgctagctggctaactgcAGCCTGTCAACCGTCAGACATAGCgttagcgttagcattagctCGCTGAATGACCGAAATCGCAGTCGAGCTGAAATAGGCACGAAAACACCTCCAGCTTTGTGTCTCCATCTCACAGGAATGGTTTAAGGTCGGGAAAGATGTGTTCTTGTTTTCCTCAGGGCTTTATCTGAGTGTCAGTGGAcaattttgctctttttgcCTGGTTTATAAAGCTAGATAAAGCTAACAACAGATAACTGGAACCAGATGTTGGAGAACCGTTATTACCATAAATGCTGTAATATATGACACCGTGAATTATATAGGATTATATAACGCTATAGGCACAATGTTTCCCAGGGCAGCTGAGACAGCCTCTGATTCACATTAAAGGGGCTTCACATCTATTACACATCCCTTCTTAACGCTACTGGAACCCTGTTATTTAATTTTGGGTCATTTCTGAGAACCCAGTCCGTGACGAGGTGATATCTGAGTCAAGAATCTCAGCATGAAGAAGTTCTTCGACTCTCGGAGGGAGCTGGTTAGTGTTGGTCCTGGCTCTGGAGGTGGTGGAGGATCCAGTGGAGTCGGTGGGAACTTCATCGGCCGGACCTTCACCATCGGACATCATCAGGTCACCGTGGAGGAAACCCTCGCTGAAGGTGGTTTTGCCATCGTGTTTTTGGTTCGGACCAATCAGGGTGTTCGATGTGCGCTGAAGAGAATGTACGTGAATAACGAACACGACCTGCAGGTGTGTCGCCGAGAAATTCAAATCATGaGGGATCTCTCAGGCCATAAGAACATTGTGGGCTACGTGGACTCGAGCGTGACGGCTGTAGGAGGCGGTGATGTGTGGGAGGTTCTCATCCTCATGGACGTGTGTAAAGgaggtcAGGTGGTGAATCTGATGAACCAGCGTCTGCAAACGGGATTCACAGAGACTGAAGTGCTGCAGATTTTCTGTGATACGTGTGAAGCTGTAGCTCAACTGCACCAATATAAAACTCCCATAATCCACCGGGACCtaaaggtGGAGAATATCCTGTTACATGATCAGGGACATTACGTACTGTGTGATTTCGGCAGCGCAACCAAGAAGTTTCAAAACCCACAGAGTGATGGAGTGACTGTTGTGGAAGAAGAGATCAAAAAGTACACCACTCTCTCATACCGAGCTCCTGAAATGGTGAACCTGTATAACGGTAAACTTATCACCACCAAAGCAGACATCTGGGCTCTGGGATGCTTGCTGTATAAGCTGTGCTTTTTCTCGCTGCCCTTCGGAGAGAGTCAGGTGGCCATATGTGACGGGAGCTTCACCATCCCAGATAACTCCCGTTACTCCTACGACATGCACTGTCTAATCCGCTACATGCTGGAGCCGGATCCGGATAAACGGCCCGATATTTATCAGGTGTCTCACTTTGCTTTCCGACTCGCTCGACGTGAATGTCCTGTCCAAAACACACagAATTCCCCACTTCCCTCTAAGCTCCCTGAGCCAATAAGAGCAAGCGAGGCAGCAGCGGCGAAGAAGAGCCAAACACAGACGAAGCCCAGgctcACAGATCCCATTCCCACCACTGAGACGTCCATCACGCCACGTCAGAGGCCCAAAGCTGCTCAGGCTCAGCCAATAGGAGGCGTCCTGCAGATCCAACCTGCTGCACTCACACCACGCAAGAGAGGTACACCTATACACTCagCTGTGAGTGTGAATTTGGCTCAGCCAGCTGCAGCACTGCagtctcagatcacacactcctctaaccAGCCTCAGCACaaacagTCCGTGCAGCCAATCCCAGTTTCGGCACCTGTATCAGGAAGTGTAACTCCACCAGTGACAAGCCCCGCCCCTCCAGCAGTAACAAGTCCTGCTCCTCAGAAAGCCACACCCACTCCTTCAAGTCCGGTTCCACCCACCGCTCCAGCACGTAGTGCCAAGCgcaaacagcaacaacaacaaaatcaacaaccaccacaacaacaaaaacagcctCCTCTTGCAGCACAGCCACTTGAAGCCACGCCTACTCCCACACCCCCTGCCCCACCCACTGCTGAGGAAATGCCTACCACTATGGGCCTCTCCCAAACTCCGCCCTCTTCCCCAAGGACCCAGAAGGCAGGGCACAGACGCATCCAAAGTGATGTCACACACAGTGCAATGGTTGGTGTGTGTGCAAGCCAGTCAACGCAGCAGCTACAGGCTGCTACAGCCGAGGCGAACCTCAACAAATCCAAGTCAGCCAGCACCACTCCATCCAACTCTCCACAGTCTTCCCAGCAGAGTGTGTATGAATCTAGCCAGCAGTGCGGAGCCACCACTTCTGTCCCAAATCTTGTCACCACTTCTGCCCAAAGTCTTGCCACTTCTTCTGCCCCTCCTGCCCCGAGTCTAAGCGCAACTTCTGCTCCGAGTCTTAGCACCAGTGCTGCTTTGAGTCTTAGTGCCCTGGACCAGCCGTCCTGGAACCCCTTCGGCGATGATAACTTCTCCAAGCTGACAGCCGAGGAACTGCTTAACAAAAACTTCACCAAACTCTCCAAAGaGACTGTAGAGCCCCCGAGCATTTGCACAGAGGAACTTCTGCCTGGACTGGACTCTGTTGAACCCATTACTCAGCcttcagCTGAAAGACCTGCTGATATTCTGGGGTTGGATTCAGGTGCTGATTTACTGGCAGTACCAGAAAAGCTAATAGAGGGTCTGAAGTCTCCAGATGCATCTCTTTTGCTGCCTGACCTCCTGTCAATGTCCGACCCCTTTGGTAGTTCTGTAGAAGACATGAGAGATGgaagtgctgaggtgtgtgtggacTCCCTGATTCCTGGACTGGAGGCTCCTCAGGTTCATCCTGTGCAGACAGACGCAGTGAGGAATGATACTCTGAGTGGAGAAGACTCTCTTTTGGGCAGTCCTTTCTCCTCTGGCCCCGCCCCCTGTCTAGATGAATTTGCACCTGTGTCAGGAGGATCTGCCCACAGCACGACAGACTCGACTTGCTTGATCTCTGGCTTTGAGCCGCCGGGTTCAGACAAAAGCGCAGATGACGAGTTTGACCCGATCCCAGTTCTTGTCTCCAAAACATCTCAAGGCTCCTCCCACAGCGCTACTGGCTCTGACTCCAGTTTGCCCAGTTTGGCTTGTTCACTGCTGCTGGTGGATCAGCTCATCGACCTGTAGAGCTCAACGCTCTCTGTCTAAATCTCTCActtcatccctccctccctccacccacccatccatccatccatccatccattcatccatccattcatccatccttccctctgtctgtctaactGCTTTGCTTTCAGCCTCCGTCCTGCTGCTCTCCCTTCTTTTTTCATCTCTCCACTGCAATCCTcttctgagttttttttcttgggtGGGGGGGTTCATCTCTTCTTCATTCATGTTACattcttcattctttcatcaAAAAAACCTGCATTACATTAGTcggtttctgtttgtgtgtgaatgtgtgtgtgtttgagagagagagagacacatctCACCTTATTGATTGATTAGAAAGACATTTGGATCTTATCATATCTCAGACTTGCACTGCACTTTGTAGTTTCTATTATTATGTTaaatctctttttatttaat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU321787 lncRNA upstream 19353 18963355 ~ 18963780 (+) True G271571
TU321785 lncRNA upstream 21578 18961302 ~ 18961555 (+) True G271569
TU321784 lncRNA upstream 22366 18960528 ~ 18960767 (+) True G271568
TU321754 lncRNA upstream 22866 18958168 ~ 18960267 (+) True G271540
TU321773 lncRNA upstream 40114 18942757 ~ 18943019 (+) True G271557
TU321792 lncRNA downstream 9029 19011175 ~ 19012232 (+) True G271576
TU322140 lncRNA downstream 226915 19229061 ~ 19229423 (+) True G271853
TU322180 lncRNA downstream 331700 19333846 ~ 19335880 (+) True G271884
TU322221 lncRNA downstream 480351 19482497 ~ 19484904 (+) True G271923
TU322222 lncRNA downstream 487412 19489558 ~ 19494875 (+) False LOC113544004
XM_026942458.2 mRNA upstream 25089 18948898 ~ 18958044 (+) True trim69
XM_026942471.2 mRNA upstream 76944 18900743 ~ 18906189 (+) False plpp5
XM_034312828.1 mRNA downstream 66060 19068206 ~ 19073060 (+) True LOC117599383
XM_034312829.1 mRNA downstream 80375 19082521 ~ 19101181 (+) True LOC113544111
XM_026942824.2 mRNA downstream 101047 19103193 ~ 19119113 (+) True ddhd2
XM_026942825.2 mRNA downstream 101560 19103706 ~ 19119113 (+) False ddhd2
XM_034312899.1 mRNA downstream 101595 19103741 ~ 19119113 (+) False ddhd2
trnas-uga_9 other upstream 46163 18936889 ~ 18936970 (+) True trnas-uga_9
trnas-uga_8 other upstream 47145 18935907 ~ 18935988 (+) True trnas-uga_8
trnas-uga_7 other upstream 47455 18935597 ~ 18935678 (+) True trnas-uga_7
trnas-uga_6 other upstream 47920 18935132 ~ 18935213 (+) True trnas-uga_6
trnas-cga_2 other upstream 48168 18934884 ~ 18934965 (+) True trnas-cga_2
TU322151 other downstream 239563 19241709 ~ 19243905 (+) True G271863
XR_004579823.1 other downstream 373951 19376097 ~ 19409418 (+) False LOC113544086
TU322206 other downstream 397452 19399598 ~ 19404927 (+) False LOC113544086
TU322526 other downstream 780281 19782427 ~ 19786819 (+) False LOC113543969
TU322527 other downstream 780281 19782427 ~ 19786819 (+) True LOC113543969

Expression Profile