RNA id: XM_034312780.1


Basic Information

Item Value
RNA id XM_034312780.1
length 5031
RNA type mRNA
GC content 0.49
exon number 28
gene id LOC113538163
representative True

Chromosome Information

Item Value
chromosome id NC_047611.1
NCBI id CM018557.1
chromosome length 24879021
location 226364 ~ 245418 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CCGCGCACTCGTCCCTACACAGTGCTGGTCCCGCAGGCTGGAGTGAGCAGCACGCGGCGCAGTTTAACGGCATTTTGCTGCGCGGCTGCGACACAGAAACGTCAGAATGTGACTCAGAGCCACCACAGGCAGCACGCGCACACCGCAGGGCCCCTAACGAGGCGAACTGTTTAGTCTGTCAGCAGGCGGATTGGGACGCAGCCGCCGCCTCACAGAGTCCCGCAGAGAAACTGATGGAAGGAGGCAAGTTGTGAGGAAAAGAGACAGGAGGGATTTAATGTCCTCTTGAAAAAgggtaaatttatttaaaatggcgGAGTCCGGTCCGTTTAGAGGCCTGCCCCGGATCCGGAGGGCTGCGGCCTCAATTCCTGGAAATCTGCACCTGGTTCTGGTTCTGAGGCCCAAAGCTCAGTCTCAAGGCACCGGCACAGACCTGGGCTTCCGCTTCTGTCAGGACGACTTCACTATTAAAATGCCTgtgatCATGCTGAGTTCAGTCACTGATCTTCTGCGTTATATTGATGAGAACCAGTTGAGTGCTGATTTCAGTGGAACTCTGGAGTGCAGCTCCACAGACTGGATCGTCCTGAGGACGGCGATAGAGAGTTTTGCGGTGATGGTGAAGGACGTCGCTCAGCTGCTGCAGGTGTTTGGAACCGAACTGGCTGAGACTGAACTGCCCGAGGAACCGAACGCCATCGAGTACCTGCTCCGCTCGCACACCGACAAATACAGACAGATGAAGGATGATATTCGCTCGGTGATGAAGGAGGGACGTCAGATCCTGTCTAATCTGGAAGGAGCTAagaggacagaggacagagacATCGCTCAGGACAGGGACACTGTACAGAGgctcCTGACCCAGCTCAGGGACATGGAGATGGCGTTTGACGGGTTTTTTGAGAAGCATCACCTGAAAATGCAGCAGTATCTGCAGCTGCTCCGTTACGAGCAGAGCTTTCACGAGACGGAGGTGAAGCTGGaagatctgattggtcgagagAAAGCGATTCCTGCTGCGGGAGTGACGGCGGCTCAGACGAAACAACTCATCACCGAACTACACACTCTGGACTCCATCGCTGAGgaggagaTGGGCCAGGCTCAGATCGTCATCCTTCACGGTCATCAGTTAGCGGCGAGTCATCACTACGCTCTGGCTCTCATCGTCCAGCGCTGTAACGAGCTTCGTCATCACTGTGACACACTGACCACTGCCCTGCGCAACAaacacacctcactcacacacacacacactctgcagctGCACCTCGaggaggcggtGCGTTGGTGTGATGAGAGTGTGTATCTGTTGGCTGGTCAGATGGTGGATAAGTTCCAGTCGAAAGAAGGAGCTCAGGAAGCTCTGAATGACATCGAGAGACTGCTGGAGTCCAAACCAACACTCAGCTacattactgacacacacacacctgagatacaggctcaGGTGACAGCAGTGATGGAGAAGTTCTCCTCAGTGCAGGTGATGCTGGAGAACAGACAGGCATGTTTGCGTAAACTCACCTGTGTTCAGGTGAGACCCATCCAGCCCGTGTCCCCGAGACCCGAGAGCCCGACCCGCCTCAAATCCCCGCTGTTCTCCCCCAAACACAGTTTTGATGTGAACTCCAGTCTGAAGTTCTCCTTTGATCTCTCTCTCCCGGGAAAAAGAACCGCACGCAAGAACAACTGCAGCAAGAAGattgaGGTGATGCACAAGGAGAGTCATGGTGGTGTGTGTCAAGAAGCAGAGGGAGCAGAGAACCCTGAACAGCATAGAtgtcaTGTGATGAAGGAGCTGATTGACACGGAGAAGGTTTATGTGGAGGAGCTGCTCAGTGTTCTACTGggttacaGAGCTGAGATGGATAACCCCGCTCTGTCTCACATCCTGCCATCGGAGCTGAAAGACAAGAAGGAGGTTTTATTTGGAAATCTGccagaaatatacaaatttcACAGcaggatatTTGTTCAGGATCTGGAGAGCTGCCGTGAGACTCCGGAGAGAGTGGGAGCAAGATTTCTAGAGAGAAAGGAGAATTTTCAGGTGTACGAGCGTTACTGCCAGAATAAACCTCGCTCGGAGGcgatgtggaggcagtgtgcaGACTCTCCGTTCTTCCAGGAATGTAAGAGAAAACTGAAGCACAAGCTGGATTTGGACTCGTATTTACTGAAACCTGTTCAGCGTCTGACCAAATATCAGCTCCTGCTGAAGgagctgtTGAAGCACAGTACACAATCGCAGTATGTGTGTGAACTCCAGGGGGCGCTAAACGCCATGCTGGACCTCCTCAAATCTGTTAACGACTCCATGCACCAGATTGCCATCACTGGAtacgagGGGGACCTGTGTGACCTACACGGCATtgAACACACACGGGCCCActggctcacacacactcacagcttcaAACACTGCCTCAGGATGAGTGCTGTGGGTGTCACTGAGAACATTAAAGGAGATGTGAAGAAGTTTGAGATCTGGTACAGTGGGAGAGAAGAAGTGTACGTAGTGCAGgctccAACAGTTGAGGTGAAGTCAGCGTGGCTCAGTGAGATCAGAAAAATCCTCACAAACCATCAGAAAACTGGTCAagatGAAGGTCTTGGTGCTgtagactctctctctcctcttctggTGAACAGtatgGAGAGGGTGTCAGTCTGCATGCCCTGGAGCCCCGCCCCCATCACAGGCTGCTCAGGTTGTTTTGATGTCCCTCCTCACAGTAAGGGGGCGCCGGTGCACTCGGACGAGTCAGGGAGCTCCAGTCCGGTTCTGACAGACCCTGTGATGTTCTCACCTCGACCCCAGAACCGCAACCGCCGCAGTTGGCCAGGAACCTCAAACTCCGTGGATATCTGTGAGACTTTAGAGGACTGGACCACTGACCTGTCCTTCATCTCCGACTCGGATGAAGAAGATGACGTCCTGCTGGTTCCTGGGAAGTACCGAGCGCTGGTGGATCACCTGAAGTGTGGTAAAGATGAGGTCATCATAAAACACGGTGATGTCATCCACCTACTGCAGGAGAACACCGAGGGCCTCTGGCACGTCAAAAACCTGACTCGTGGAGGTGAGGGAAAACTTCCAGCTGAGGCCTTGCACAGAATTCTGGGAAATGTGGACAGAAGTCATGTGATCAGACCGGGAGGCTCAGGAAATATAAGCAGAGCGAAGAACACGCCGTGATGAGATCCTCCATGTTCAAGGAAACATCTACATTATgatccagcacacacacatacacacacacacacacacacacacacacacatacacacacacacacacacagaacatccAGCCAAAAACAGTACCGTATTTTCTGGACTATAGGTcgtggagtgtgtgttaaagtgaggtgtgtgtgtgtgtcactgtgacgTGCTCGTGTATTAGTGTGTTTACGGTAGTTGAGATACTCCAGCAGTTACGGTGCATGCAGGATCATacagggttgtgtgtgtgtgtgtgtgtgtgtgaactgcaGGTGAATAAATTTTGGAACTCTGTGTTAGGTAAAGAATTCACCTGTAGCTGTTGCAGTAAATAGCGTTTGCACTCCGTCTCGTTGCTCCTGCATGAGGCGCTCTGTGTGTTTGGGACGAATCTTTAgatgaattatattataaaatatttcaggtgTTTTGTGAACAGGGTAAGAGTTGTTCCGAGGTTAACAGACCAAaatctaaattatttaaatctaaataagaGGAAAGCGGAGACTCGTATACTCCAGAAAATACGGTAAGCAAAGGATGCGATTcgttttctcttcctttccacTGTTCTTCACTTTCCTGCATCACTGAACATTTCTGACTTTATAGAGCACAACCTCGAAACACAGTCCTCACCGTTCCCATCACCGCAGTGCGTCACAACATCAGACGTGTGTTTACGGGAGATTTCTGCTCTCAGGATCGTCATGAGAACTTTATTCTGAAGGTAACAGGAGAACAAAACTCAGCCTTTAGCAACAGAATCCCATCAGCCTCAGCGTAAAGTGAGCCGTGTGCTAAATAACGCTAGCTCGTGGATTAGCATGTGCACTGTCATGCTAATTTGTGGTGTGGGATTTTTCCTCTAATGCTAGTTCTTCACTTTCTCTAGAGATttacaaacagatttaaactaaattttaataaattctgATCAGACTTTGTACGTTCCACACCTTTCCCCTTCAGTTTAAAACGAACATGACGCTCCTGCCTGCTGTTCACGTGTTTAAACATGATTACTCATGTTTACTTCCAGGAAGTGTGAGCTTCTCTACAGGATGTGACGGAATGAAGCGTGTAGAAACACTCACCGGTTTTAGGATCTACTTCGTGCCAAACTGTGACgtcacacatttttacacacggCGCTTTGTTTCTAATCCTTTTGTATACTTTGGTAGTGTTTTCATAGCATCGTGGATTTATTACAGTTAGTTTAATGTGTTAGTTTAATGCTtcactgtttacacacacacacacacacacacacaaagcagtgtTAAGGAATATTTCAGAGCCTTTAGTCTTCCTCGCCGGTGTGCGCTAAGCTAGCTTTGCTAGGAGCTTTGGTAACTCCGCTGCTCAGGCGGTTATGAAGGTGTGTTTTATAGCTGAAAGAATGAAGCCATAAATGTCACTAAGGAGCTTGAGGTGTGTGAAGGTACGTGTGCCGGAGAAGGTGTAGTGTTTagtctataaaatattttaactacATGTTTAAGCACAAGATGTATAATGctataaaaaaaagccattttcttCCTCAGTGCAGTGTCTTGAATGTAAATATGCGCTGTTTATTATCTCATTGTGCCAAACTGAATGTactcatgtttcatttttatgcttCACTGttaagaaaaagcaaaaacacacatccaGCTGCTGTACGCTGCTCACTGAGTGTAGTTAATTATTTACTCATTAGCTAATGCCTGCTGCTAATCAACTGCTTTATGAACACTGACGGCTCTAAGGCTAAATGAACCACTGATTTCACCATCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU309272 lncRNA upstream 3602 221220 ~ 222762 (+) True G261064
TU309255 lncRNA upstream 41895 183986 ~ 184469 (+) True G261048
TU309225 lncRNA upstream 81497 144401 ~ 144867 (+) True G261034
TU309222 lncRNA upstream 84821 139290 ~ 141543 (+) True G261031
TU309208 lncRNA upstream 88752 132557 ~ 137612 (+) True G261020
TU309278 lncRNA downstream 39830 285248 ~ 287067 (+) False G261068
TU309279 lncRNA downstream 39830 285248 ~ 310549 (+) True G261068
TU309277 lncRNA downstream 62666 308084 ~ 308719 (+) True G261067
TU309305 lncRNA downstream 81844 327262 ~ 327468 (+) True G261090
TU309311 lncRNA downstream 133602 379020 ~ 436288 (+) False ska2
XM_034312776.1 mRNA upstream 121575 97689 ~ 104789 (+) True wdr74
XM_026912069.2 mRNA upstream 156976 66588 ~ 69388 (+) True znhit2
XM_026912073.2 mRNA upstream 160074 63779 ~ 66290 (+) True mrpl49
XM_034312333.1 mRNA downstream 9528 254946 ~ 266773 (+) False fgf13b
XM_026933139.2 mRNA downstream 9528 254946 ~ 266082 (+) False fgf13b
XM_026933041.2 mRNA downstream 96253 341671 ~ 351928 (+) True il2rga
XM_034312540.1 mRNA downstream 182731 428149 ~ 436298 (+) True ska2
XM_034312541.1 mRNA downstream 214844 460262 ~ 476591 (+) True LOC113523717
TU309200 other upstream 124335 97748 ~ 102029 (+) False wdr74
TU309275 other downstream 11208 256626 ~ 266760 (+) True fgf13b
XR_004579859.1 other downstream 66058 311476 ~ 311986 (+) True LOC117599405
TU309343 other downstream 199349 444767 ~ 480711 (+) True G261104
TU309389 other downstream 237017 482435 ~ 486200 (+) False prdm15
TU309320 other downstream 262079 507497 ~ 512773 (+) False bcl7ba

Expression Profile