RNA id: XM_034312818.1


Basic Information

Item Value
RNA id XM_034312818.1
length 8288
RNA type mRNA
GC content 0.48
exon number 25
gene id LOC113544768
representative False

Chromosome Information

Item Value
chromosome id NC_047611.1
NCBI id CM018557.1
chromosome length 24879021
location 6197279 ~ 6253031 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

aaataaaaaaaaaaatggagtgaGGAGGAGTGAATGTGTCTGATAGAAGAACTTAATCATCACtgcagagatgatgatgatgatgatttctgtttctttgcGGATGATTAATAAGAGGAGGACAGGAGATGGGAAGCTGTGGCAGAATGCGGACTGTAAATGGGCTTGTGTTAAAGCAGAAGCTCATGGCTTGTGTTTTTGAGTGAGGCGGAACACTCAGGACTCACAGAGACACATTGCTGCACATCTGGAGTCTCTGACAGCGGCGAAGCGGGCGGACGATAAACAGCCAAACCTCCTGACTGCTCCTGCATGAGCGCTACAGCGAAGACAACACACAAACCTGGCGAGTGGAAGCCGCTGAACTGGGTCCTCGCGTCGTGTTAGCTCCCTTCTCAAGTCAGCTAGCGTCCACTGCTAGCTAACAGCGGGACATAGCATTGCACACACTGACAACGTCGACctgcgagcacacacacacacacacacacacacacatatatatatatacaggatGTGCATGGGTTAGCTAGCTGGGGAATTTGCCAAACAAATGACCATGCCTCACAAATAGCCAACTACAGAAGCTTTTCAAGCTCCAAATCCAGATAACATTACAGGTGCATGGGATGAACTTGGCTCCGGCCCTCTGACGCCCCTGAGCTAGGGCCTGCCTGGTGGATTCCTCATTCGCCCCGCTCCACTGCCAACATGCTGATTAAAGAGTACCGCATCCCCATGCCCATGAGCGTGGAGGAATACCGCATTGCCCAGCTCTACATGATCCAGAAAAAGAGCCGAGAGGAGAGCGAGGGCGAGGGCAGTGGCGTGGAGATCCTGGAGAATCGACCCTACACGGATGGGCCCGGCGGCTCGGGACAGTACACCCACAAAGTGTACCACATCGGTCAGCACATCCCCAGCTGGTTCCGCTCCATCCTGCCCAAAGCAGCTCTACGGGTAGAGGAGGAGTCCTGGAACGCCTACCCTTACACTCGTACCCGTTACACATGTCCTTTCGTGGAGAAGTTCTCTATCGACATTGAGACGTATTATAAGCCCGATACAGGGAACCAGAACAACGTCTTCAATTTGTCTTCAGCGGAGAAAAGGCAGCGGGATATCGACCCTATAGACATTGTGAAAGATGTCATTGCACCTCATGAGTACTTGGCTGAGGAGGATCCTAAGCTGTACAAGTCGGTGAAGACTCAGCGAGGCCCTCTGTCAGACAACTGGATCGAGGAGATTAGCCATAACCCGGGCAAGATGCCCGTCATGTGCGCCTACAAGCTGTGCAAAGTGGAGTTCCGCTACTGGGGCATGCAGTCCAAGATCGAGCGCTTCATTCACGACGTGGGTCTTAGGAAAGTGATGGTGCGTGCGCACCGGCAGGCCTGGTGCTGGCAGGACGAATGGTACGGCCTGACCATGGAAGACATCCGGCAGCTGGAGCTGGAGACCCAGCTGGCCCTGGCCAAGAAGATGGCGCAGTTTAGCTGCAACGAGGATGGAGGTGAGGGCAATGCCAGTCCTGCCAAAGAACAGGACGCCAAGGAGGCCATCAACGCCATCGAGAACGAAAACGCAACACGGAGTCTCGGGGACACGCTGCAGGCTCGGGGAGAGCTCACCAAACAGTGGTCCACATCGTCCAGATCCTCCCGCTCTTCAAAGAGAGGAGCCAGCCCCTCTCGACACAGTATTTCCGAATGGCGCATGCAGAGCATCGCCCGAGACTCAGACGACAGCACAGACGACGAGTTCTTTGATGCACAAGAGGACCTCTCAGACAGCGAGGAGATCTTTGTCAAAGAGATCACCAAGTGGAACTCCAACGACCTGATGGACAAAATCGAGACGGCGGAGGTGGACGAACCCCAAAGTGACTTGTACCAGGACTCTGGGGTTGAGTATTCCGAAGCTGGGAACGTCCAAAGACTTAATGAGGATGGCTCAGGTCAGCAGGGCCTGCAGTCGTCAAAGGTGCACGTGTTGCTCTTGGTCCTGCATGGCGGCAACATCCTGGACACAGGAGGTGGAGAGCAGAGCAGCAAGCAGGCTGACGTCAACACCATCAGCTCGGGCGTTGAGACGGTCATGCGCGTGCATTACCCGGCAGCTCTAGGCCGCATCGCCATCCGCATGGTGCCATGCCCCGCCGTGTGTGTGGAGGCTTTCTCACTCGTCTCAAATTTAAGTCCATACAGCTATGACGAGGGCTGCCTGTCTAACAGTCAGGACCACATCCCCCTCGCTGCTCTGCCTCTGTTGGCCACATCCGCTCCTCAGTACCAAGACGCCGTGGCCGCGGTGATAGTGCGCGCCAATCAGGTGTACGGAGACTTTATAAAATCGTTGGAAGGTACCACATTCTCTGGCCAGGTGTGTCTGATAGGTGACTGTGTCGGAGGAATCCTGGGTTTTGATGCCCTCTGCAGCAGCAACATCACCGTGTCAGAGAGCCAGAACAGTAGCAGGAGAGGGAGCATAGTCAGCGtacagGACAATGATCTGCTCTCGCCGGGCATCATCATCAACAGTAGCCCTTCAGGCTCGGGCTCGGGCTCAGGCTCAAGTTCTGGTTTGTCCCTGGAAGGCAGCCGTCACTTGAGCCGCAGCAACATCGACATCCCACGCTGCAGCGGTGCCGACGACCCCAAGAAGCAGCTGCCCCGCAAGCGTAGCGACTCCTCCACCTACGAACTGGACACCATCAAGCAGCACCAGGCCTTCCTGTCTAGTCTGCATTCCAGCGTTCTGAGGAATGATCCAGGCTCTCGGCGGTCCAGTAACAGCACTATGCTGGAAGGAGGTGGCGCTCTGGGCAAGTTTGATTTCGAGGTGTCTGATTTCTTCCTGTTTGGCTCTCCTCTGGGTTTGGTCCTGGCTCTGAGGAAAACTGTGGTTCCTTCTCTAGACGTGGCTCATCTCCGTCCAGCCTGCCAGCAGGTGTATAACCTGTTCCACCCTGCAGACCCGTCAGCCTCACGCCTGGAGCCACTCCTGGAGAAAAAGTTCCACCTGCTGGCGCCCTTCAGCGTGCCACGTTACCAGCGTTTCCCTCTGGGCGACGGGCACTCGGCCCTGTTGGTGGAGACCCTTCAGAGCAACCCTCACCTCCTGCTGGAGAGTGGAGGCCGCTGCCATGATGGCTTAGGCGAGACCTCCATCCCCGTTCCCGTGCTCAACTGGCAGGCTGCGCCAGCCAcgcctgagtCAGACGTAATGCATTCTCACGGGGGGATGTTCCTGGAGAACTCCTACCCCTCGTCTCCTGCCTCAGCCCCAGCGTCCCGCATCATTCGAAGACCCAGTGAGGTCAGCATCGCCAGCCAAGTTTCCGGACTGGCGGATAGTTACACTGCCTCCAATATTGCCAACATTGCTGCTCGTTGGTGGGGGACAAAGCGCATTGACTTTGCCCTGTACTGCCCCGATGCCCTGACTGCCTTTCCCACCGTGGCTCTACCTCACCTGTTCCATGCTTCCTACTGGGAGTCTACAGACGTCGTGTCCTTTCTGCTCAGACAGgTAATGAGGCATGAGAACTCCAGTATTCTGGAGCTGGATGGGAAGGAGGTTTCAGAATTCACACCCTCCAAACCACGGGAGAAGTGGCTGAGGAAGAGAACACATGTTAAGATCAGGaacGTAACAGCGAACCATCGCGTGAATGATGGAGTCTTTACAGAGGACGGCATGCAGGTGGTCACTGGCCGTTTCATGTATGGCCCGTTGGATATGGTCACTCTAACTGGAGAGAAGGTTGACATCCACATAATGACACAACCTCCATCAGGAGAGTGGGTGTACTTTGACACAGAGCTGACCAACAGCAGTGGCCGAGTTTCCTACACAATCCCCGAGAGCAAACAGCTAGGGATCGGCGTGTACCCTGTCAAAATGGTGGTCAGAGGTGACCACACATCTGCAGACAGTTACCTGACTGTGCTGCCACGTGCCACAGAGTTTGTAGTGTTCAGCATCGATGGCTCGTTTGCTGCCAGCGTGTCTATTATGGGCAGTGACCCTAAAGTGAGAGCAGGGGCAGTGGATGTTGTCAGGCACTGGCAGGACTTGGGCTACCTGATCGTCTACGTGACGGGCCGCCCGGACATGCAGAAGCAGCGGGTGGTGGCCTGGCTCTCGCAGCACAATTTCCCTCATGGCATTGTGTCCTTTTGCGACGGTCTCGTGCACGACCCCCTTCGTCACAAAGCAAACTTCCTCAAGTCCCTCATCACTGAGGCACATATGAAGATCTTTGCTGCGTACGGCTCCACAAAGGACATCTCGGTGTACACTTCTCTCGGCCTGCCGCCATCTAATATCTACATTGTTGGCAGACCAACGAAAAAGATGCAGCACCAGTGTCAGTTCATCTCGGACGGTTATGCGTCTCATTTGTCGCATCTGGAGTACAGTCAGCGTTCTCGGCCGGCCAAGACAGGCAGCACACGTGTGACTCTGCGTAAGGGAAGCTTTGGTCTGGGTGCCAGTGGCGACTTTCTGCGCAAACGCAACCACCTGCTGCGCACCATCTCCTCCCAGCCGGCCCCCTCCTCCTCGGCCACGTCCTCCGGCCATGGGGCCCGTCCTGAGCGCGCTCAGAGCCAATCAGAGTTTGACCGCGAGCGGGCCGACCGTGCACAGAGGAGCATGAGCATTGCGGCAGGCTGCTTTGGGCGTGCAGGGAAGATGGAGGGAGGCACTCTGAGCCCCAAGTAACCCTCCATCACATTGGCGTCTATAACTGGGAGTGTGCCGGTCCATGGGATTTTAAAGGAAGGGTGGATCgggaaagaatgaaaatgaaaacggGATACAATGGAATGGACTCATTGAGAGACTGGTACAGCTTTTCTAATGTAGCAAGAGTGGCATTGGGGAAAAAGATTTTGTTCCACTGAGGTAACACACCAACAAGAAATCTAATGCCTTATGCATCGCTCTAGGTTTTGGAACGCTGGTCCTTGCCTCTCCGTTTGCTTGTATGCTTGGGTAGTTCCGACTCCCCAATCTCAACCTGCATCATCAGAAAAGTGGAAGAAGTCTCCAACATGTCATCATGATGTCCACCAACATTTACCACCTGTAAATACGTGCCTCCCTCCTCACGTGCTCAGGGCAGCAGTGTACAGACGAGTTGGCCATGGTCCATCCCAGAAGCCACTTGTGTTAGCCACACTCAACCCCTCTTTGCCAACTGCTAGCCCCcagtttcttcctctttttactAAGATGTTCTTGTGGAGGAGGTTCTCGTCAAAAAGTCCTGCAGCATTTGGCAATAAGGACCCACCGTGTTATATCTTGTGTTTGGCTCGCAGGTCATCAGAGGCCTTACTTCTTAATAGTGTATTACCACACGAGCATTAAACGTACACGGGACGAGTGCTGCTCTGGGGCTGAAAGCGAGGACgttggcctttttttttgacACTCAATCTGTAATTTGGCAACAATCCCTTTATCTGGCCATCTGCTTGCAATACCTCTTGGACATCACTAGGGTGTCTAGTGCTCCTGAAGACTCTTTCTCATCTCTCTGGTGCAGCATGCCATGTATAGATAGCCAAGTACGAATCCTCCTGAGCCTCCATGCTATCACGTTTCCTCAAACACCCTTTCTTCTCCCTGGTTCTGGAGCAAAACCACTTCGCTGCTCCGTTCCTCCGAATGAGGCGACTGGAGTTGGTGTCTATCCATATTTACAAAGTGTATATTGGAGAAATCCATTTTCTCCAGACAGTCAAAGCGGTAGTTAGTTGTCTCTTGCCAATTTGTGCACCTTTATTGCTTTGATTTATTGGAAGAATCATAGAATATATGGACAACTGGCGACACTTGATACAACCGATGGccaaaatcatttcttttacaGAAGCTGTAGTAAATGTATAACCTCATTGTTCCTTTTGCACAAGTCGATAGTGGAGAACCTTGTTACCATCTCATGTGGCTACATATTGTTATCTTGTAGTGCATGATCCTTATTAATATATGACAGGATtcgagtgagtgtgtgcacaaTGGTAGTATTTATCTCTAATGTCAGGATTAAGAAATGTGCCAAAATTAGAACGATCATAGGAATGACAAACGAAACAATAGGCTTTATCAGTTATTTCCTTTGTAATGTACTACTGAGTATTTGATCTGAGTATATATTTGAGCTGTAAAGATCTGGTGAGTTCAGCTTCGATGGCACATGTATAATGTTTATAAGATTTACATCATTTCAGGTCAACATGAAGTCCTTTAAACGTCCGTGCTCTAGCTTACTGTTCATATGTAAGTGAGATGTATAGAACTATTGCAGGATATTCTTTTAATCATAAGCTGtgattttacttttgtttttagattCAAAGGCATGATACGTTGTAGCCAAATACTgtataaagatatttttttggTATTTGTTAACAGGCAGACACTGGATGAGAGGATGTGTTGTATTTAATTAGGTTCCTACTGGAGTTGTATATTTGAATTCGAGTGCTGGGAGGTTTTTTGGACGCAGCAGCCGCTTGTTTATAATCGTTCAGGGGAGATATAGAATGTTTTCTGATCATGTGGGAATAACGGACGTGTAGATATTGTAAAGATGTACATTTTACTATATAGGCAATGTATGGTCAGGAATTATTTATGTAGATTCGCAAAAGTAATGTCAGATTTTAGTGTGTTCATGGttgctttaatttttctttgttatataatTGAGATTGTTTCTTTAAGGACCAACACCATTAATGCCATCAGTGCagtttgtgtacaagaagactacaAAAGACACCACCGCACAGACAATCAGTCTCGGGCACACAAACCTAGAACACAAACACCTGGAAATACGACACTCATCACTCATCAAATACTTAACATGTCCATTAGATGAAAGACATTTTCTGGAGGatgtaaaagatttattttattaaactgtgGCAGGTTAtatgtggtctttttttttttttaattagaaaggTTCACCAAATTTGAAAGAAATTGTTCTGTGAAGGTATTTTATTTGGAGGATTTAAGGCGGTGTGCGTAAAATGGCAACATGACACAAGAGTAATGTTCTCGAAAGAAAAGTGTTTCTGTGTAGAATATAATGCCTTCAACATAGCGTTTTAAATCTGTCCAGCAGAGGATTTGTCCAGCAGAGGGTGCGAGTaagcagctttcacacaagaaaatgcagaggttttttttttttttttggaccaataaatgtgcaatatgTACTCGTGGttgatttgttttatatacaAGTCCAGAAATGTCCACCACCTTTTTCTCCGTGAATGACAAAATCTCTGTTGGAAGCAACGTCCTGATTAAGAAGCTAAGATTTGCTGTTTTGTTAttgctgtttaaatgtttaatttaaaatcgAATCATGTTGCAATCAGAAAACAGTTCTACAATCTgtaagagcttttttttttttttaattagtatatttatttttattttttgccacccttgccctttttttccccccattttaaTTCAACCAAGTGATGTGCTCCATCCAATGTTATCTCCAAAACATTTAGAGATATAAATTGGTAAATATTACTGGGAACCACAGGAAAGCAAGCCATTTTCTGTAACTCATCACTTTAAACGATTGCGgacacatttaacatttaatttatctcatttttatcACAGACCAACACTCCTACCTGTTCAGAAATATGAGCCCTCATTCTTAGGTGCATGTCAGCTAcactattatatataaatatatatatatatctcatttATATATTACCGATTTATATACAACACCGGGTCAGGTTTTGAGTGTATTGTTCCATTTTTCAATAACTTATTATGAATACACTGTCCTCTGTGTAGAAACGGCAATCagcatgtaattttaaaaaaaacaaaaaaaacacacatttgcacacatttCTGAGTTTATGGCACAATGTGATATTGTAAAAGCATCAGAGAATGTACCGCTGATACACATTGTACTATAGCAAAGACGTGGCAGCAATTTTAAACGTttgagtatttattttttttttttttaacgactATCCAAGAAAACTCGCATTTCAACTCATTTTTCTTTGCCGAGTGTTCAGATGGTGTCCCATCCCATTTCTCAAAAAACCCTGTATTTCCAACCGCTCTACATAcaaactgtaacactgtaaacaGTTTTGATCTGAATGACTTCTCAGCTCTTTTTCACCCACTTGTGCTCGATTCTGTATTATTATATGTACTGTGGATTAAATACAGTTGGACAGCTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU313352 lncRNA upstream 2137 6194928 ~ 6195142 (+) True G264426
TU313337 lncRNA upstream 2598 6194074 ~ 6194681 (+) False LOC113544903
TU313350 lncRNA upstream 22587 6174314 ~ 6174692 (+) True G264424
TU312899 lncRNA upstream 270973 5922310 ~ 5926306 (+) True G264056
TU312825 lncRNA upstream 492448 5702843 ~ 5704831 (+) True G264002
TU313402 lncRNA downstream 128635 6381666 ~ 6452851 (+) True G264475
XR_004579851.1 lncRNA downstream 186866 6439897 ~ 6441877 (+) True LOC117599393
TU313800 lncRNA downstream 448806 6701837 ~ 6702362 (+) True G264835
TU313877 lncRNA downstream 678847 6931878 ~ 6947742 (+) True G264903
TU313866 lncRNA downstream 709554 6962585 ~ 6962918 (+) True G264894
XM_026943971.2 mRNA upstream 2923 6169893 ~ 6194356 (+) True LOC113544903
XM_026943972.2 mRNA upstream 6191 6169893 ~ 6191088 (+) False LOC113544903
XM_034312373.1 mRNA upstream 28315 6165896 ~ 6168964 (+) True LOC113544858
XM_026943893.2 mRNA upstream 28315 6165896 ~ 6168964 (+) False LOC113544858
XM_026943892.2 mRNA upstream 28315 6165897 ~ 6168964 (+) False LOC113544858
XM_026943617.2 mRNA downstream 191223 6444254 ~ 6447190 (+) True elovl7b
XM_026943680.2 mRNA downstream 194428 6447459 ~ 6458962 (+) True depdc1b
XM_034312421.1 mRNA downstream 216919 6469950 ~ 6651852 (+) False LOC113544721
XM_034312422.1 mRNA downstream 217540 6470571 ~ 6651852 (+) False LOC113544721
XM_026943642.2 mRNA downstream 222620 6475651 ~ 6651852 (+) False LOC113544721
TU313203 other upstream 185377 6008800 ~ 6011902 (+) True G264336
TU312620 other upstream 1116662 5077881 ~ 5080617 (+) False triap1
TU311007 other upstream 3380021 2795548 ~ 2817258 (+) False pcp4a
XR_004579857.1 other upstream 3849894 2343661 ~ 2347385 (+) True LOC117599403
XR_004579764.1 other upstream 4777844 1414504 ~ 1419435 (+) False ponzr2
TU313925 other downstream 813840 7066871 ~ 7082441 (+) True G264948
TU313944 other downstream 863029 7116060 ~ 7118616 (+) False ddx55
trnar-ccu_6 other downstream 1115449 7368480 ~ 7368552 (+) True trnar-ccu_6
trnam-cau_30 other downstream 1115531 7368562 ~ 7368633 (+) True trnam-cau_30
trnar-ccu_7 other downstream 1116232 7369263 ~ 7369335 (+) True trnar-ccu_7

Expression Profile