RNA id: XM_034312831.1


Basic Information

Item Value
RNA id XM_034312831.1
length 2250
RNA type mRNA
GC content 0.41
exon number 10
gene id LOC117599384
representative True

Chromosome Information

Item Value
chromosome id NC_047611.1
NCBI id CM018557.1
chromosome length 24879021
location 19449805 ~ 19468222 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ATGTCACAAGTGATTTTGATTGACCAAATCAAATCATTATTGGAGTCCATGAGTCAAATACAAATAGACAACACCACAGAAATCGATAGCTTGAACGTCACAACAGCTGAATATCTGATTGAGATTGAGATTGATGCAGAAAATATAACAGTCCTGATACTACTGAGGAACCTTTCGGTGACACACCGTTTACCCTTTGTAAATAGTAACATCAACACCACTGAAATTAACATCACTACAGtgtgcagtttgaatggtactgaatatcagtgcaGGTGTGAGGATCAGTATTTCTGGCCGTGTGAAAAGTGCACAGTATATGGGGCTTGTGATGACATCACCAATGCCTCATGTAGCTGCATCAACGCTATTCCAAATGATGGACGCTTCTGCCAACCAATCAGTGAGCTGTCTGgtCAATATGCATGCACAACAACAGTAAGCTCTCTGCCCTATGTTATCTGGCAAACCATTACAATTCAGCCATACCCAGATATCCAAGTGACCAGAGACAAAGTTGTAAAATtatttaaatgctCTGATAGTGTATTTGGAGCTGGGAATTTTGGAGAAATACACAGTGGTGACTGCAGAGGAGACATGGTTGGCTCTCAAATGGCTAAGTGTAATTCATCAGGCCAGTGGGACCCTATAGAAAACAACTGTATTCTGCGcatcaaaattcaaaatttaaaagATGAAGCTGAGGATTTCCTAAAAATTACTGATGTCATTGGATCAGTAGGTGCACAGGACACAtggatcattttaaatgaaaacaatacAACCATGAATGCCAGTTCTGAACTTGTGAAATCgactgaaaatatttcactcaGACTCCCGGACGAAAGCATCAACATTACAACAAACTCTACCTCTCTCAGAAAAACTAAAATTACTGCCCCCTTTTCTGAAACACTTGGAAAAAATTTAACTACCCAAATAAGTCTTCCAGCGATTAGAGAACCGACTTTTCTCACAGTGATAATTTCTTCAGCTTTCGACAATATCTTACCTGTTCGAAATCTGACCTACAATGACAGCAGTCAAACTGGCACAAGGATCAATGGAGATGTAGTCCTGATTGAGACAAACTCAACAATTAACAACATCTCCCTTTCTTTTGATATCAAAAATAAGGCACTTGTAAACCCTCAGTGTGTCTTTTGGAACTTTAGTCTTCTGAATGGTGTTGGTGGATGGGACTCGACTGGATGTCAATTAAAGACATTAGGGAATGAAACTGAAAGATTTACATGTGAGTGCAATCACACAACCTCTTTTTCAATCCTGATGTCACCATTTGCCCTGGATAAAGGCTTAATCTTAGATTACATAACTTACATTGGTGTTGGCATTTCCATGGCCAGCTTGGTTTTGTGCCTCGTCATTGAAATCATTATATGGAAATCAGTGACAAGAAACGACACATCCTACATGCGCCATGTCTCCGTATTTAACATTGCTGTCTCCCTTGTGATTGCGGACATATGCTTCATCATTGGAGCAGCTGTTGTTAACCAAGGAGACGGACCCTGCAGTACAGCAACATTCTTCATGCACTTCTTTTATCTTGCCCTTTTCTTCTGGATGTTGCTGTCAGCACTCTTGCTCCTCTACCGCACCCTCATGGTCTTTTCCAGAATGACCAGAGGCACAATGATGGCCATAGCCTTCACTGTTGGCTATGGAGCCCCGCTAATCATAGCTGTCATTACTGTGGCATCTACAGCTGGAAACAATGGATACATTCAAAAAGATTATAATTGCTGGCTAAACTGGAATGAAACGAAGGCCCTCCTGGCATTTGTGATTCCTGCTCTGACTATTGTAGCTATAAACCTCCTGGTGCTTATTGTGGTTCTGTGTAAGATGATGAGGAGAGGAGTTAATGCTTCCACTCAGCCAGATGACAAACATCCCCTACTGGTCATTGCTAAATGTGTAGGGATTTTAACACCTCTCTTTGGTCTAACGTGGAGATTCGGCATTGGGACCATGGTGTCTCCGAACTTTGGGATTCATTTGGTGTTTGCATTCCTTAATTCACTGCAGGGTTTCTTTATTTTGGTGTTTGGAACTTTGCTGGACAGTAAGGTCCGAGAAGCATTGGCAGGAACGTTTTCACTGAGGAACTTAAGCTCTAACCGCACCAGGaCACTGAAGTGTTACCAGCTGAAGTTCAAAATCTGCCTGAGCAACATGGCTAATAAAGAAGGAAACATGTCAGACTTGCTTGGGTTATAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU322180 lncRNA upstream 113925 19333846 ~ 19335880 (+) True G271884
TU322140 lncRNA upstream 220382 19229061 ~ 19229423 (+) True G271853
TU321792 lncRNA upstream 437573 19011175 ~ 19012232 (+) True G271576
TU321787 lncRNA upstream 486025 18963355 ~ 18963780 (+) True G271571
TU321785 lncRNA upstream 488250 18961302 ~ 18961555 (+) True G271569
TU322221 lncRNA downstream 14275 19482497 ~ 19484904 (+) True G271923
TU322222 lncRNA downstream 21336 19489558 ~ 19494875 (+) False LOC113544004
TU322223 lncRNA downstream 27943 19496165 ~ 19496866 (+) False LOC113544004
XR_004579783.1 lncRNA downstream 348956 19817178 ~ 19825232 (+) True LOC113544143
TU322531 lncRNA downstream 350245 19818467 ~ 19825232 (+) False G272180
XM_034312673.1 mRNA upstream 9450 19424147 ~ 19440355 (+) True LOC113544087
XM_034312674.1 mRNA upstream 9450 19425742 ~ 19440355 (+) False LOC113544087
XM_034312671.1 mRNA upstream 35178 19376092 ~ 19414627 (+) True LOC113544086
XM_034312672.1 mRNA upstream 43491 19376359 ~ 19406314 (+) False LOC113544086
XM_026942743.2 mRNA upstream 74470 19369830 ~ 19375335 (+) True pbdc1
XM_034312832.1 mRNA downstream 17050 19485272 ~ 19489094 (+) True LOC117599385
XM_034312833.1 mRNA downstream 20984 19489206 ~ 19520777 (+) True LOC113544004
XM_034312834.1 mRNA downstream 62655 19530877 ~ 19540276 (+) True LOC117599386
XM_034312298.1 mRNA downstream 72156 19540378 ~ 19549194 (+) True LOC113544003
XM_026942462.2 mRNA downstream 181241 19649463 ~ 19665324 (+) True LOC113543930
XR_004579823.1 other upstream 40387 19376097 ~ 19409418 (+) False LOC113544086
TU322206 other upstream 44878 19399598 ~ 19404927 (+) False LOC113544086
TU322151 other upstream 205900 19241709 ~ 19243905 (+) True G271863
trnas-uga_9 other upstream 512835 18936889 ~ 18936970 (+) True trnas-uga_9
trnas-uga_8 other upstream 513817 18935907 ~ 18935988 (+) True trnas-uga_8
TU322526 other downstream 314205 19782427 ~ 19786819 (+) False LOC113543969
TU322527 other downstream 314205 19782427 ~ 19786819 (+) True LOC113543969
XR_003404464.2 other downstream 314358 19782580 ~ 19786831 (+) False LOC113543969
TU322529 other downstream 325690 19793912 ~ 19805795 (+) True G272180
TU322530 other downstream 325690 19793912 ~ 19805795 (+) False G272180

Expression Profile