RNA id: XM_034312832.1


Basic Information

Item Value
RNA id XM_034312832.1
length 1455
RNA type mRNA
GC content 0.43
exon number 14
gene id LOC117599385
representative True

Chromosome Information

Item Value
chromosome id NC_047611.1
NCBI id CM018557.1
chromosome length 24879021
location 19485272 ~ 19489094 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CGCTTCTGCCAACCAATCAGTGAGCTGTCTAataACTCTACATGTCCAGCTGTACCCTCCACagCTGAATATCTGATTGAGATTGAGATTGACGCAGTAGACATAACAGTCCTGATACTCTTAAGGAGCCTTTTGCAGACATCCAATTTTCCCTTAATAGATAGTAACATCAATATCACTGAAATGAACATCACTACAGtgtgcagtttgaatggtactgaatatcagtgcaGGTGTGAGGATCAGTATTTCTGGCCGTGTGAAAAGTGCACAGTATATGGGGCTTGTGATGACATCACCAATGCCTCATGTAGCTGCATCAACGCTATTCCAAATGATGGACGCTTCTGCCAACCAATCAGTGAGCTGTCTAATAACTCTACATGTCCAGCTGTACCCTCCACagCTGAATATCTGATTGAGATTGAGATTGACGCAGTAGACATAACAGTCCTGATACTCTTAAGGAGCCTTTTGCAGACATCCAATTTTCCCTTAATAGATAGTAACATCAATATCACTGAAATGAACATCACTACAGtgtgcagtttgaatggtactgaatatcagtgcaGGTGTGAGGATCAGTATTTCTGGCCGTGTGAAAAGTGCACAGTATATGGGGCTTGTGATGACATCACCAATGCCTCATGTAGCTGCATCAACGCTATTCCAAATGATGGACGCTTCTGCCAACCAATCAGTGAGCTGTCTAATAACTCTACATGTCCAGCTGTACCCTCCACagCTGAATATCTGATTGAGATTGAGATTGATGCAGTAGACATAACAGTCCTGATACTCTTAAGGAGCCTTTTGCAGACATCCAATTTTCCCTTAATAGATAGTAACATCAATATCACTGAAATGAACATCACTACAGtgtgcagtttgaatggtactgaatatcagtgcaGGTGTGAGGATCAGTATTTCTGGCCGTGTGAAAAGTGCACAGTATATGGGGCTTGTGATGACATCACCAATGCCTCATGTAGCTGCATCAACGCTATTCCAAATGATGGACGCTTCTGCCAACCAATCAGTGAGCTGTCTAATAACTCTACATGTCCAGCTGTACCCTCCACagCTGAATATCTGATTGAGATTGAGATTGACGCAGTAGACATAACAGTCCTGATACTCTTAAGGAGCCTTTTGCAGACATCCAATTTTCCCTTAATAGATAGTAACATCAATATCACTGAAATGAACATCACTACAGtgtgcagtttgaatggtactgaatatcagtgcaGGTGTGAGGATCAGTATTTCTGGCCGTGTGAAAAGTGCACAGTATATGGGGCTTGTGATGACATCACCAATGCCTCATGTAGCTGCATCAACGCTATTCCAAATGATGGACGCTTCTGCCGACCAATCAGTGAGCTGTCTAaTAACTCTACATGTCCAGCTGTACCACCCACaggtaaaacaaacacactccagTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU322221 lncRNA upstream 368 19482497 ~ 19484904 (+) True G271923
TU322180 lncRNA upstream 149392 19333846 ~ 19335880 (+) True G271884
TU322140 lncRNA upstream 255849 19229061 ~ 19229423 (+) True G271853
TU321792 lncRNA upstream 473040 19011175 ~ 19012232 (+) True G271576
TU321787 lncRNA upstream 521492 18963355 ~ 18963780 (+) True G271571
TU322222 lncRNA downstream 464 19489558 ~ 19494875 (+) False LOC113544004
TU322223 lncRNA downstream 7071 19496165 ~ 19496866 (+) False LOC113544004
XR_004579783.1 lncRNA downstream 328084 19817178 ~ 19825232 (+) True LOC113544143
TU322531 lncRNA downstream 329373 19818467 ~ 19825232 (+) False G272180
TU322559 lncRNA downstream 433941 19923035 ~ 19923178 (+) False gfra2b
XM_034312831.1 mRNA upstream 17050 19449805 ~ 19468222 (+) True LOC117599384
XM_034312673.1 mRNA upstream 44917 19424147 ~ 19440355 (+) True LOC113544087
XM_034312674.1 mRNA upstream 44917 19425742 ~ 19440355 (+) False LOC113544087
XM_034312671.1 mRNA upstream 70645 19376092 ~ 19414627 (+) True LOC113544086
XM_034312672.1 mRNA upstream 78958 19376359 ~ 19406314 (+) False LOC113544086
XM_034312833.1 mRNA downstream 112 19489206 ~ 19520777 (+) True LOC113544004
XM_034312834.1 mRNA downstream 41783 19530877 ~ 19540276 (+) True LOC117599386
XM_034312298.1 mRNA downstream 51284 19540378 ~ 19549194 (+) True LOC113544003
XM_026942462.2 mRNA downstream 160369 19649463 ~ 19665324 (+) True LOC113543930
XM_026942526.2 mRNA downstream 294230 19783324 ~ 19786831 (+) False LOC113543969
XR_004579823.1 other upstream 75854 19376097 ~ 19409418 (+) False LOC113544086
TU322206 other upstream 80345 19399598 ~ 19404927 (+) False LOC113544086
TU322151 other upstream 241367 19241709 ~ 19243905 (+) True G271863
trnas-uga_9 other upstream 548302 18936889 ~ 18936970 (+) True trnas-uga_9
trnas-uga_8 other upstream 549284 18935907 ~ 18935988 (+) True trnas-uga_8
TU322526 other downstream 293333 19782427 ~ 19786819 (+) False LOC113543969
TU322527 other downstream 293333 19782427 ~ 19786819 (+) True LOC113543969
XR_003404464.2 other downstream 293486 19782580 ~ 19786831 (+) False LOC113543969
TU322529 other downstream 304818 19793912 ~ 19805795 (+) True G272180
TU322530 other downstream 304818 19793912 ~ 19805795 (+) False G272180

Expression Profile