RNA id: XM_034312834.1


Basic Information

Item Value
RNA id XM_034312834.1
length 484
RNA type mRNA
GC content 0.43
exon number 3
gene id LOC117599386
representative True

Chromosome Information

Item Value
chromosome id NC_047611.1
NCBI id CM018557.1
chromosome length 24879021
location 19530877 ~ 19540276 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CTTTGACAGATAATTCCCGAGGgtgaaaaaaagttattttaccACTTCTTGATGTCTTCTGAATGTACCCAATAACTTGTATTTATATGTAGAAAAACTGAAGTGATACCAGCTGAAGTTCATCAAGAGCATCATGGCTAATAAAGGGAAAACAGAATATTTCCTGCTTTTTGTTGTTATTCTGCTCATTTATATGCAAGGAATAACTCATAagAATATGATGACTGCTGCAATATCCACAATCAACACAACTGCTGCAACCCCAACCAACGGAACTACAGCCAACACAACAACTGCTCCAACCCCAACCAGCAGAATTACAGTCAACACAACAACTGCTCCAGCCCCAACCAACGGAACTACAGTCAACACAACAACTGCTGCAGCCCCAACCAACGGAACTACAGCCAACACAACAACTGCTGCAACCCCAACCAACGGAACTACAGCCAACACAACAACTGCTGCAACCCCAACCAACGGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU322223 lncRNA upstream 34011 19496165 ~ 19496866 (+) False LOC113544004
TU322222 lncRNA upstream 36002 19489558 ~ 19494875 (+) False LOC113544004
TU322221 lncRNA upstream 45973 19482497 ~ 19484904 (+) True G271923
TU322180 lncRNA upstream 194997 19333846 ~ 19335880 (+) True G271884
TU322140 lncRNA upstream 301454 19229061 ~ 19229423 (+) True G271853
XR_004579783.1 lncRNA downstream 276902 19817178 ~ 19825232 (+) True LOC113544143
TU322531 lncRNA downstream 278191 19818467 ~ 19825232 (+) False G272180
TU322559 lncRNA downstream 382759 19923035 ~ 19923178 (+) False gfra2b
TU322558 lncRNA downstream 400770 19941046 ~ 19943499 (+) False gfra2b
TU322611 lncRNA downstream 425851 19966127 ~ 20008197 (+) True G272246
XM_034312833.1 mRNA upstream 10100 19489206 ~ 19520777 (+) True LOC113544004
XM_034312832.1 mRNA upstream 41783 19485272 ~ 19489094 (+) True LOC117599385
XM_034312831.1 mRNA upstream 62655 19449805 ~ 19468222 (+) True LOC117599384
XM_034312673.1 mRNA upstream 90522 19424147 ~ 19440355 (+) True LOC113544087
XM_034312674.1 mRNA upstream 90522 19425742 ~ 19440355 (+) False LOC113544087
XM_034312298.1 mRNA downstream 102 19540378 ~ 19549194 (+) True LOC113544003
XM_026942462.2 mRNA downstream 109187 19649463 ~ 19665324 (+) True LOC113543930
XM_026942526.2 mRNA downstream 243048 19783324 ~ 19786831 (+) False LOC113543969
XM_034312420.1 mRNA downstream 252428 19792704 ~ 19805795 (+) True LOC117595711
XM_034312380.1 mRNA downstream 285832 19826108 ~ 19830268 (+) True LOC117599326
XR_004579823.1 other upstream 121459 19376097 ~ 19409418 (+) False LOC113544086
TU322206 other upstream 125950 19399598 ~ 19404927 (+) False LOC113544086
TU322151 other upstream 286972 19241709 ~ 19243905 (+) True G271863
trnas-uga_9 other upstream 593907 18936889 ~ 18936970 (+) True trnas-uga_9
trnas-uga_8 other upstream 594889 18935907 ~ 18935988 (+) True trnas-uga_8
TU322526 other downstream 242151 19782427 ~ 19786819 (+) False LOC113543969
TU322527 other downstream 242151 19782427 ~ 19786819 (+) True LOC113543969
XR_003404464.2 other downstream 242304 19782580 ~ 19786831 (+) False LOC113543969
TU322529 other downstream 253636 19793912 ~ 19805795 (+) True G272180
TU322530 other downstream 253636 19793912 ~ 19805795 (+) False G272180

Expression Profile