RNA id: XM_034312836.1


Basic Information

Item Value
RNA id XM_034312836.1
length 2340
RNA type mRNA
GC content 0.51
exon number 11
gene id ppp2r2ab
representative True

Chromosome Information

Item Value
chromosome id NC_047611.1
NCBI id CM018557.1
chromosome length 24879021
location 22272066 ~ 22289033 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GCAGGGCATGTTCCCAAGCAAGATGCCGGCGCGTGTTGATGGCGTCACGGCCGGGCGGGGTTGCGCCATTTTGAATGTGGATAGTGGAGTGTGGGAGGAAAAGGCTGAAGGAGGAGTGTTGGACTGCTTCAGAGGGACTTCAGctggagaggtggagagaaaataaagcgGCTAGAACACATCCTCGATTTATTATCAAGcagggattttatttatttatttatttttttgcaataaCACAAACCAAGGGAAAGTTATCAGGAACCGCCGCTGAgattccctctccctctctctctctccctctctctcgccaTGGCAGGTGCCGGAGGCGGGGGCAACGACGTGCAGTGGTGCTTCTCGCAGGTCAAAGGAGCAATCGATGATGACGTAGCTGAAGCTGATATCATCTCCACCGTGGAATTCAACCACTCAGGGGAGCTGTTAGCCACTGGAGACAAAGGCGGACGCGTCGTCATCTTCCAGCAAGACACTGAGAACAAGGCGCAATGCCGCAGCGATTACAACGTTTACAGCACGTTCCAGAGCCACGAGCCCGAGTTCGACTACCTGAAGAGTCTGGAGATCGAGGAGAAGATCAACAAGATTCGCTGGCTGCCACAGAAAAACGCCGCACAGTTTCTGTTGTCCACAAACGACAAAACTATAAAGTTGTGGAAGATAAGTGAACGTGATAAGAGACCAGAGGGCTACAATCTAAAAGAGGAGGATGGACGCTGCAGAGATTCGACCACCATCACTACTCTACGGGTGCCCGTGTTCAGGCCCATGGACCTGATGGTGGAGGCGAGCCCTCGGCGTGTGTTCGCCAACGCTCACACTTACCACATCAACTCCATCTCGGTGAACAGCGACAACGAGACGTACCTGTCCGCCGACGACCTGCGCATTAACCTGTGGCACCTGGAGATCACCGACCGCAGCTTCAACATCGTGGACATCAAGCCGGCCAACATGGAGGAGCTGACGGAGGTGATCACGGCGGCCGAGTTCCACCCGCACCAGTGTAACACCTTCGTCTACAGCAGCAGCAAAGGCACCATCCGCATGTGTGACATGCGCGCCTCCGCCCTCTGCGACAAACACTCCAAACtgTTCGAGGAGCCAGAAGACCCCAGCAACCGCTCTTTCTTCTCAGAAATCATCTCTTCCATCTCGGACGTGAAGTTCAGCCACAGCGGCCGCTACATGATGACCCGAGATTATCTGTCCATCAAGATCTGGGACCTGAACATGGAGAATCGGCCAGTGGAGACGTATCAGGTTCATGAATACCTCAGGAGTAAGCTGTGCTCGCTCTACGAAAACGACTGCATCTTCGACAAGTTCGAGTGCTGCTGGAGCGGGAACGACAGCGTGGTGATGACGGGCTCATACAACAACTTCTTCCGCATGCTGGAGCGCACGCAGCGGCGAGACGTCACCCTGGAGGCGTGCCGTGAGAGCTGCAAGCCCCGGCAGGTGCTGAAGCCGCGGCGCGTGTGTGCCGGCGGGAAGAGGAAGAAGGACGAGATCAGCGTGGACAGCCTGGACTTCAACAAGAAGATCCTGCACACGGCCTGGCACCCGCACGCCAACATCATCGCCGTAGCCACCACCAACAACCTCTACATCTTCCAGGAGAAGGGCAACTAGGAGCGACCAACCTCGCACACCCCCCACACCTCCgtctgtgtgcgtgcgtgtgtgaggAGAAAAAGTTAAAGAGGAACTAGAGAAAATAGTTTTTGTGACAACCATCACCACTACTGTCATCATCTTTATCATCACGATCAGGACGGGGCGGGGCGGGGCAAACTGGCACCATCATGTTGTACCGAGTCAGCCGTGACACACGCCGTCCACTCTGTGTACCCACAATCCTCTCCTCTTACCCATCAGGCCTGGCTACAGGGCCACGTTGGCCACAGGTTCTGAAATGtcagtcattttgtttttgtcctttttttgtaCTTGTCGAAACCTTCGAACTAGGAATGTGCTGATGATCAGTTACGCAATACATTGcaatatttgcatatattattaacatgtaCCTTTCAAACATAAATGAGAAATTCCATAACTCTGTGCACCGGATGAGGATTCCAGCTGCCTCCGCAATACGATACTGtattgtaatataaatatttaatatcagcacatgcctaatTTGAATGAATGAGTCCCTGTATTCTTTACACCTCAGCTCTTTTTGTGccattaaagttttttttttaaatcttctcagTGAATTTGCCAAGTTGTTTAGGttgttttaattctgtttaaagaattttgtctttcttttgctCAATAAATTCTCCTCAATACTGTACTCAA

Function

GO:

id name namespace
GO:0010458 exit from mitosis biological_process
GO:0050790 regulation of catalytic activity biological_process
GO:0007165 signal transduction biological_process
GO:0000159 protein phosphatase type 2A complex cellular_component
GO:0005737 cytoplasm cellular_component

KEGG:

id description
K04354 PPP2R2; serine/threonine-protein phosphatase 2A regulatory subunit B

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU323778 lncRNA upstream 233917 22037839 ~ 22038149 (+) True G273226
TU323780 lncRNA upstream 240540 22030600 ~ 22031526 (+) False LOC113544129
TU323810 lncRNA upstream 289875 21981979 ~ 21982191 (+) True G273258
TU323800 lncRNA upstream 309199 21962664 ~ 21962867 (+) True G273248
TU323428 lncRNA upstream 779394 21485151 ~ 21492672 (+) False G272940
TU324041 lncRNA downstream 273071 22562104 ~ 22562325 (+) True G273473
TU324179 lncRNA downstream 512048 22801081 ~ 22840120 (+) True G273600
XR_004579839.1 lncRNA downstream 703509 22992542 ~ 22994797 (+) True LOC117599377
TU324282 lncRNA downstream 703523 22992556 ~ 22994510 (+) False LOC117599377
TU324287 lncRNA downstream 748376 23037409 ~ 23038616 (+) True G273683
XM_026942779.2 mRNA upstream 238069 21922551 ~ 22033997 (+) True LOC113544129
XM_026942559.2 mRNA upstream 793503 21476087 ~ 21478563 (+) False LOC113543995
XM_026942513.2 mRNA upstream 798948 21468412 ~ 21473118 (+) True LOC113543961
XM_026910063.2 mRNA upstream 805923 21462543 ~ 21466143 (+) True LOC113523962
XM_026942860.2 mRNA upstream 819993 21447235 ~ 21452073 (+) True LOC113544185
XM_026942658.2 mRNA downstream 2048 22291081 ~ 22310553 (+) True bnip3lb
XM_026942647.2 mRNA downstream 26261 22315294 ~ 22351716 (+) True dpysl2b
XM_026942648.2 mRNA downstream 32056 22321089 ~ 22351716 (+) False dpysl2b
XM_026942855.2 mRNA downstream 80223 22369256 ~ 22374870 (+) True tmem230a
XM_026942708.2 mRNA downstream 90887 22379920 ~ 22426821 (+) True igsf9a
TU323423 other upstream 793186 21476112 ~ 21478880 (+) True LOC113543995
TU322810 other upstream 1729112 20540325 ~ 20542954 (+) True G272408
TU322768 other upstream 1842923 20423399 ~ 20429143 (+) True G272374
TU322750 other upstream 1873119 20398280 ~ 20398947 (+) True G272367
trnae-cuc_36 other upstream 2423240 19848755 ~ 19848826 (+) True trnae-cuc_36
TU323909 other downstream 80241 22369274 ~ 22374875 (+) False tmem230a
XR_003404475.2 other downstream 333395 22622428 ~ 22665570 (+) True lrrtm4l1
TU324289 other downstream 836334 23125367 ~ 23129320 (+) False lhx6
TU324492 other downstream 976420 23265453 ~ 23274170 (+) False rc3h2
TU324491 other downstream 1032538 23321571 ~ 23360503 (+) False LOC113543986

Expression Profile