RNA id: XM_034312837.1


Basic Information

Item Value
RNA id XM_034312837.1
length 2639
RNA type mRNA
GC content 0.59
exon number 18
gene id exd3
representative True

Chromosome Information

Item Value
chromosome id NC_047611.1
NCBI id CM018557.1
chromosome length 24879021
location 23873693 ~ 23935370 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

tgtacaggtgaggACGTGGCCGTGCTCAGAGAGCAGCTGTGTGACCTGTGGAGCAggaaggagctggaggagCTGAGATTACGGACCGCGTCCGGGTTCTCCCGGTTCCGCTCGCCCCTGGCCGGGCTTCTGATGCTGCTGGACGGCTGCCCGGGTGTCCAGAAGAGCAGATCCACCACGCTGGGTCAGTTCCTCCTCACCGAGTTTGTGCGATGGAGACGCGGCCAGGCTCGGGTCAGCGTGAAGGAGCTGAAGGACGAGGAGGAGAAGCGGAACCTGCAGCTCCAGGCTCTAGAGCTCATCACGGCCTCACAGCCAGGATACATGGACCTCCTGCTGGAGATCTACGAGctgaagaacctggagaagAACCTGCTGCTGGAGCACGTGGCCTTCCTGCAGAACAGCTGCTGCTTCAGAGAGGCGGCGTTGCTTGGCATGAAGTTAGGACTTCAGGAAGAACTCGACATGGAGCAAATGTGTGTTCCTCTGATCCTGATGGACAAGCTGCCCCTGGCCGAGGCGTACGTTCAGGATCACGCTGACCTGCAGGAGCGTCTGATCCGGCTGCTGGACTCGTGGTGCAGTCCAGACTTCAACCTGGAGGACGTGCGCAGGCAGTTTCCTTCTTTGTCCCTTTCCAAGCACCAAACAGACCAAATCCAGCCCAAGCTGCTCATTAGACACGTCTTCCGGCTCATGGAGAAATTCAGCATTGATCCtgGTTTGTGTGTGAACGCTGTCTACAAGAGGAAACTCGACTCCCTGAGGTTTCTCATGTACAAGAGGTTTGGAGAGAAGAACATGACGGAGGAGAACTGGAGGGATCACGTGCAGgtcaCAGTGGAGGGCAGTGTGGACCTCCAGGTCGTGTTAGTGGAGCTCTTAGTGAAACACAGTGGACTGAAAGCTGCGGCTCAATGGGCCAAACACTACAGTGTCCCGAGAGACAGACTTCCCATCGGGGTGTGGGACACCATGGAGACCCTCTCCTCCAGTCAGCTgGAGATAAATGAAGTGTGTTCTCCTCTGGACCTGTGGGTCACTCCTCCGTCTCACCAGCTCCAGTTCTACCAGCTTCCTCTGGACCAGCAGCGCGTCCACACGGTGGAGAACTCGGAGCAGCTGCAGCTCTGCAGAGACTCGGTTCTACAGGCGGGGCGTGTGGTGGGCGTGGACATGGAGTGGAGAGCCGGATTCGGAACGGTGAGCACGCAACGCATCTCGCTGATCCAGCTGGCCGTGAAGGAGCGAGTGTTCCTGTTGGATCTGTGTGCTCCGGGTCTCAGCCATCACAGCCTGACCGTCAACTTCATCCGAGCGCTGCTCACCGACACCAGCGTCCTCAAACTGGgttatgGGATGTCTGGAGATTTGAGGAGTCTGGTGGCCACATGGCCTGAGTTAAAGGAGGAACCTCTGGAGTTTAAGGGAGTGTTGGACCTGCTCCATGTCCATCAGCAGCTGCAGCGGTGCTGGCGAGGGAGAACCGGGCCGAGGCCCGTGGAGGTGAACGAGGGTCCAGCGGAGAAAGGGTTGAGTCTGCTGGTGCAGCAGGTGCTCGGAAAACCGCTGGATAAAACGGAACAGCTGTCCAACTGGGAACGCCGTCCACTTCGCACCGGACAGGTCCGCTATGCAGcgaTAGACGCGTACTGTCTGGTGGATGTGTATCTGACTCTCTCTGCGGATCCGAAGGCGTTCGGTCTTCCTGATGATCTGCTCTCTATCAAGCCGAGTCCATCGACCAAAAGTGACTCCGACAAAAAAGCTAAAGAGAAGAGGAAGCAGACGGGCCGGAGGGGTCGGCAGAGTGGCATCGGGCGGACGGGCGATCAGGACGAGTGCGTGAGGGGGAACGGCGAGCGACACGGAGCCTCCATAACGCCGCAGGAGCTGCGCGTGGTGTGTGACAACATGCTGCAGGGCCTGGGCCGGTACCTGCGCTGCGTCGGCGTCGACGTGCTGATGCTGGAGAACACGGACGACCACAAAGTAGCAGCGcagATCGCTCGAAACGAAGGTCGTATCATCCTCACTTCCGGTCAGCCATTTCaaactctccgGTCGCAGGTCGCAGAAGGCCGCTGTCTCACTCTGGACTGTTCGGAGAAGGCTCGGGACCAGGCTGTCCGCGTCCTTAAACATTTCAACGTCCACCTCACGCCATCGGACATATTCAGTCGGTgccagGCGTGCAATAATGACGAGTACCTGAAGCTGCCGAGAGAAGACATGACTCAGATGATGAACAAACGAGgcCTGATTCAGGACACGGTGCACAAACAGGACGACTGGGAGGCTCAGTGCGACGCTCAGGTGGACTGTAACAGGTCGAGGGCCCCGGGCGGGCCGGCGTTCACTCCTCACTGCCGCTGGGCCCCTCGCTCGGCCCTCGACGCTCACTCCTTCAGGTTCAGCGGCGGCGCCGAGGTGCAGCTGGAGACGGTTCCTCCCGGTCTGCTCCCTCGCATCCCCGAGTACTTCATCTGCACGCGCTGTGGGAAGGTGTTCTGGGAGGGAAGCCACTTCGACCGGGCGCTCGCTCAATTCCAGGACGTTCTCAACATTTCGGATGACGACACGACGGCCAGGAAGCACTGAGCGTTCCGAAGTTTGagggctgtaaaaaaaaaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU325055 lncRNA downstream 5236 23868242 ~ 23868457 (-) True G274370
TU325031 lncRNA downstream 12741 23859340 ~ 23860952 (-) False nrarpa
TU325046 lncRNA downstream 25129 23848360 ~ 23848564 (-) True G274361
TU324996 lncRNA downstream 28217 23835055 ~ 23845476 (-) True G274318
TU324997 lncRNA downstream 32901 23835055 ~ 23840792 (-) False G274318
TU325075 lncRNA upstream 3826 23939196 ~ 23942218 (-) True G274383
TU325072 lncRNA upstream 8042 23943412 ~ 24020906 (-) True G274380
TU325078 lncRNA upstream 46802 23982172 ~ 24015670 (-) True G274386
TU325093 lncRNA upstream 60593 23995963 ~ 24012459 (-) True G274400
XR_003404480.2 lncRNA upstream 86417 24021787 ~ 24030494 (-) True LOC113544148
XM_034312286.1 mRNA downstream 10433 23859305 ~ 23863260 (-) False nrarpa
XM_034312285.1 mRNA downstream 10433 23859305 ~ 23863260 (-) True nrarpa
XM_026942636.2 mRNA downstream 128160 23723727 ~ 23745533 (-) True dbh
XM_034312509.1 mRNA downstream 366195 23394533 ~ 23507498 (-) False strbp
XM_034312890.1 mRNA upstream 9005 23944375 ~ 23956050 (-) True ak3
XM_034312723.1 mRNA upstream 105661 24041031 ~ 24095321 (-) True ptbp3
XM_034312387.1 mRNA upstream 182653 24118023 ~ 24193873 (-) False LOC113543977
XM_034312396.1 mRNA upstream 182653 24118023 ~ 24193873 (-) False LOC113543977
XM_034312391.1 mRNA upstream 182653 24118023 ~ 24193873 (-) False LOC113543977
TU325032 other downstream 10425 23861998 ~ 23863268 (-) False nrarpa
TU325027 other downstream 71409 23798359 ~ 23802284 (-) True G274342
XR_004579778.1 other downstream 2666523 21189969 ~ 21207170 (-) False LOC113544130
TU322970 other downstream 3792782 20079415 ~ 20080911 (-) True G272551
trnad-guc_8 other downstream 3848399 20025223 ~ 20025294 (-) True trnad-guc_8
TU325209 other upstream 316233 24251603 ~ 24253306 (-) False inip
TU325248 other upstream 362111 24297481 ~ 24301004 (-) False LOC113544170

Expression Profile