RNA id: XM_034312854.1


Basic Information

Item Value
RNA id XM_034312854.1
length 2486
RNA type mRNA
GC content 0.43
exon number 9
gene id marveld2a
representative False

Chromosome Information

Item Value
chromosome id NC_047611.1
NCBI id CM018557.1
chromosome length 24879021
location 7371065 ~ 7381988 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GAACCGCTggtttcagggaaaaaaaaatttgcgAAGGTGTAAAAGCGTACGTATAATTTGGCTTGAGAGCGGTAAGTGTAGGCTGCATTGCTGAATTCCAGGAGCACAAAGGCTGTTCCCACTTACTTCAGCAATAAAATGTCTCTGTGTTAATTAATGGCCAGGTTAAACTGCATTTCTGATGTCCTCTAGTGGTGGTTCTCCTGGCCGCTTTGGGCGTGCCCAAAATGCACCTCACTATAATGATGTGCCTCCAGGCTCGTTACAGAGGAGTAACGACCTCTATAGTTTGCAACATCAGAGATCATCGGATTTGGTGCTGAGCTTGGACcctctgcctcctcctcctctccctgaCGAGCCTCCGATTGGACCAGAGTTTGACCCTAGTGACACTGAAAACTGCGATAATCCATCTGTTGACATCAAACCTGTCCACCGCTTCATTCCTGACTCGTGGAAGAACTTCTTTCGAGGGAGCAACAGAAGCAGCAATAGCTCAGTGCCTGTATCCAGTAATTTGAACACCACCACAAAGGGCATTAGGTGCTCTCCTCCTCATTCGCCCTCAGCCTCAGGGTCATATAACGATAAGTTTGGGGGCTCTGGAGGCAGCTATCATTCCCGCATAGAGCATGAAGCTATGCTAGGAGAACATCCAGAGTCGATGGATGGTCGCACTGCACACACCACTGCATACACTGCTCTGACCTACAGTGAAAGAGTTGAGGAATACCACCAGCGTTATGCCTACATGAAGTCCTGGCCAGGGCTGCTAAGAATTCTTGGTTGCATTGAGTTGCTCTTAGGGGCAGCCGTTTTTGCTTGTGTCTGTGCATACATTCACAAAGACAATGAGTGGTATAATTTGTTTGGTTACTCTCAGCCTCAAATGTATGGTGGATATGGTGGTGTGTACGGCATGTATGGGGACACTTATTACACAGGACCCAAGACACCTTTTGTCCTTGTTGTGGCGGGCCTGGCATGGATAGTGACTGTGATAATACTCGTGATGGGCATGACCATGTACTACCGTGCTATCCTTTTAGACTCAAACTGGTGGCCTCTTACAGAATTTGCAATCAACCTGGTTCTTGCTATACTTTACATGGCTGCTGGTATTGTCTATGTAAGAGACACAACACGAGGTGGACTGTGCTATTACCCCGTTTTTAACAATGGCATTAATGCAGCTTTCTGTCGCACTGAAGCTGGGCAAACAGCAGCTatcatttttctctttgtgAGTATGCTGGTGTACCTGATAGGAGCTATTGTGTGCCTGAAACTATGGAGACACGAAGCTGCACGCCGCTACAGAGAGAAGTACGGCCATGAGATGCAGACAGAATTACCTGTGGCTCGGCCTGTGGCTGGACTGAGGATCCCAGAGCCTGTCCCCATCTCTTCTGCTGCACCAGTTCACACAGATGCTCCTGCACCTTCCAAGGCAAAAGTGGTTAAAGGACATATTCCACCTGGACACATTCCCAAACCTGTGATTGTGCCTGACTACCTATCTAAATACCCAGCAATTCGAACTGATGAGGAGCGGGACCAGTACAAAGCTGTCTTTAATGACCAGTACTCTGAGTATAAAGAGCTGCATGCAGAGGTTCATGCAGCACTGAAAAAGTTCGATGAGATGGACAGCATGATGCGGAGTCTGCCTCGAAACCTGTCCAGCCAGGAGGAGTCCGACCGCATAAACCGGATCCTTCAGGTATatcagcaaaagaaaaatgaTCCTTCATTTcttgagaaaaaagaaagatgtgaaTACCTCAAAAACAAACTCTCTCACATCAAGCATCGCATTCAAGAATACGATAAGGTCATGGCATGGAATGATGGCTATGGATAAATCTTTTCCTGACTTCATGACAGTACATGCTATAATGGTCCTTCATTTCCACATGGAACATTGCATTATACTGCACAAACAGCCACGAAGATGTGAAATGACCCACATGCAATGACTTCAGACAGTTCAGCCAAAGGAAAGTATGAACAATATTTGCATAATTGTCTTAATATGCTCAACAAAATGCAGTATTGACTGGGGAAAAAATCTTATCTATATTAGTGGGTCATTCAGTTCCTCATTTTGGTTGATTAGACTCAGCTTGTGTACAACTACTGCTTGATATATGATGTTCTTagaaatagtttaaaaaaactgtgACTTGTTTGACTGTTTATTCCCCaatatgtattgtatatttactattacaaaaaaaaatgcacttatgtttttatatcaaaaGTTTTGGTTATTGTCCGCATATgttcagtttgtcattttatgtGGTGTGTGCATACACAGAGTtgatattcatttatttatgcacttAGTGACATTCCCCAtattccataaaaaaaaaaaaaatgttttacattttctattcAGCAGGTTTTAGTGTGGAATGTATTAACagtatttcctcatttttttttcattaaaaatgtaaccaaACTTTTAA

Function

GO:

id name namespace
GO:0016020 membrane cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU314033 lncRNA upstream 1608 7368489 ~ 7369482 (+) True G265039
TU313963 lncRNA upstream 122012 7248185 ~ 7249078 (+) True G264986
TU313953 lncRNA upstream 205017 7165128 ~ 7166073 (+) True G264976
TU313947 lncRNA upstream 213523 7154274 ~ 7157567 (+) True G264970
TU313949 lncRNA upstream 217226 7152799 ~ 7153864 (+) True G264972
TU314005 lncRNA downstream 35246 7417234 ~ 7417633 (+) True G265023
TU314046 lncRNA downstream 38022 7420010 ~ 7420244 (+) True G265052
TU314047 lncRNA downstream 40782 7422770 ~ 7423011 (+) True G265053
XR_004579781.1 lncRNA downstream 49374 7431362 ~ 7432343 (+) True LOC117599325
TU314001 lncRNA downstream 113516 7495504 ~ 7499302 (+) True G265019
XM_026943681.2 mRNA upstream 32642 7318652 ~ 7338448 (+) True ankrd34ba
XM_026943630.2 mRNA upstream 100243 7267501 ~ 7270847 (+) True ube2l3a
XM_026943736.2 mRNA upstream 127810 7199049 ~ 7243280 (+) True pi4kaa
XM_026943738.2 mRNA upstream 127810 7199049 ~ 7243280 (+) False pi4kaa
XM_026943739.2 mRNA upstream 129072 7199048 ~ 7242018 (+) False pi4kaa
XM_026943711.2 mRNA downstream 2294 7384282 ~ 7393480 (+) True oclna
XM_034312378.1 mRNA downstream 50553 7432541 ~ 7434926 (+) True LOC117599324
XM_026943921.2 mRNA downstream 236311 7618299 ~ 7620573 (+) True cryba4
XM_026943872.2 mRNA downstream 246093 7628081 ~ 7717349 (+) True grk3
XM_026943758.2 mRNA downstream 336067 7718055 ~ 7770444 (+) True LOC113544796
trnam-cau_33 other upstream 751 7370268 ~ 7370339 (+) True trnam-cau_33
trnam-cau_32 other upstream 1212 7369807 ~ 7369878 (+) True trnam-cau_32
trnam-cau_31 other upstream 1674 7369345 ~ 7369416 (+) True trnam-cau_31
trnar-ccu_7 other upstream 1755 7369263 ~ 7369335 (+) True trnar-ccu_7
trnam-cau_30 other upstream 2457 7368562 ~ 7368633 (+) True trnam-cau_30
TU314651 other downstream 794678 8176666 ~ 8187611 (+) False tmem167a
XR_003404565.2 other downstream 893059 8275047 ~ 8276323 (+) True LOC113544932
XR_003404563.2 other downstream 951483 8333471 ~ 8353841 (+) False LOC113544929
XR_003404564.2 other downstream 951502 8333490 ~ 8353841 (+) False LOC113544929
TU314760 other downstream 951514 8333502 ~ 8353815 (+) False LOC113544929

Expression Profile