RNA id: XM_034312867.1


Basic Information

Item Value
RNA id XM_034312867.1
length 2584
RNA type mRNA
GC content 0.46
exon number 8
gene id dgat2
representative True

Chromosome Information

Item Value
chromosome id NC_047611.1
NCBI id CM018557.1
chromosome length 24879021
location 781523 ~ 794093 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

gttcttttctttctcttagaCTTTAATCCTTTATAGATTGATTTTATAGATTTCTCGTGTGGTGTGTATTTTTGAAGAGGTTTATTGATATGAAGTGGCTGTTTTCTGACCCTTTTCTCCGTCGGCTTTCTGCGCGctgagctcagtgtgtgttctggaagTGTTTTCTTGGACTTTCTTACTGACTCTCTTTTCTCTCGCACTGATGCTGATATGCTGATCCACACATCCATCATGGAGCTTAACATTATATCTGTTCACTCTGATTGCTCATAACACAGATGTGTGTTTCCTCAcgcttttctctcttccttctcttttcacaggctgtaaaataaataaatccttctCGGGGAGTGTGAGGACGGAGTGACATGCTGCTGAGGAGCTGAACGGCTTCCATCAGCCGGCtcagtcattttatttaccgTCCTAGCGTTCGTACATCACCTTCAGGATGAAGACTTTACTCGCAGCATACTCGGGGGTTAAaaagggttcaGGTTCTCGGTTCCTCTCGGCTCTACAGGGTTTGCCCTCAGCTCCATGGCTCTCCAGGTCCAAACTGGTGAAGCAGCTGCAGGCCATCTCCGTCCTACAGTTCATCCTCACCTTCCTCGCTATGGGCATTGCTGCCACGGTGCTGCTGCTCTACCTGTTGTGCACAGACTGCTGGGTAATCTCCGCTGTTTACATCGCCTGGCTCATCTTCGACTGGAACACACCTAaacaagGTGGTCGCAGATCGGCGTGGGTGAGGAACTGGACCGTCTGGACGTATTTCAGAGATTATTTTCCGGTCAGAcTCATCAAGACCCATAACTTACCTCCCAACCGTAACTACATCTTCGGTTACCATCCTCACGGCATCTTCTGCTTCGGAGCGTTCTGTAATTTCTCCACAGAGGCGACCGGATTCTCCAAGAAATTCCCGGGGATCAAGCCGTCCCTCGCCACGCTGGCCGGAAACTTCCGCTTGCCCCTGCTGAGGGATTATTTAATGTCTGGAGGTATTTGTCCGGTGAATCGGAACTCCATCGATTATCTCCTGTCTTGTAATGGGACGGGGAACGCCGTGGTCATCGTGGTGGGCGGAGCTGCCGAGTCTCTCGACTGCGCCCCGGGAATGAACTCCGTCACCCTGAGAAACCGGAAAGGCTTCGTCAAACTCGCACTGCAGAaaggagcgGACCTGGTGCCCGTGTACTCGTTCGGGGAGAATGAGGCGTATAAGCAGGTGATATTTGACGAGGGTTCGAGGTGGCGTTGGGTTCAGAGGAAGCTGCAGAAGCTGCTCGGTTTCGCTCCCTGCATCTTCCACGGCTGTGGATTTTTCTCCACCGAGTCGTGGGGCTTCGTCCCGTACGGAAAACCCATCAACACCGTCGTTGGAGAACCAATCACGGTGCCCAAGCTCGAGGATCCGACTCCGGACGTGGTGGAAATGTACCACACCATGTACGTCAACTCTCTCACCACGCTGTTCAATAAGTACAAGACACGCTTCGGCCTGAAAGAGTCCGACGTCCTTCTCAtccactgaagaagaagaagaagaagaagaaggtacTACTGCcttttaaaaacagcaacaaaaccccagtgtttatatttttccatcacacagacacacaccacagcacCGAAACCTGAAGCCGTATAAACGACGATCACGGCTGTGTTCCAATTCTGTCTACTTCCCTTCTGCTTCGCCACTTCCTCTTGGCTGAGTTCCCAATCGCTCAAAACAGTTTttcaagaaaagaaaactttttttgggGGAAGATAAGAATAATAAACTACAGACTCCTCTCCTGTCCTGCCCTTCCAATATCCCATGGCCTTGACTTGCATATtgaaacctgattggctcttatatttgATGATGTAATTAATCTCTCCTTCAGATTTTCCAGCCAAGACGTTTGTTGAGAGAACAGTGAACATTTTCACAGTTTCAGCATCTGCACACTCAAATTTAGGGCCGTTTTTGTGTCTTAATCAGCTCAAGTGGTTATATAAGTGTTATATAAGTGTTATATAAGCGTTATATGAGCGTTAGATGAGTGTTATATAAGCGTTATGAGTGATAGATGAGTGATAGATGAGTGATAGATGAGCAGTAAATGAGTGTTATATCAGCGTTATATGACTGTTATATGAGCGTTAGATGAGCGTTATGAGTGATAGATGAGCATTAGATGAGTGTTTTATAAGCATTATATAAGCGTAACATGAGCGTTAGATGAGTGATAGATGAGCAGTAAATGAGCAGTAAATGAGCGTTAGATGAGCGTTATGAGTGAGCCGTTTTTGTGTCTTAATCAGCTCATGAGGTTATATGAGCATTATATGATAAGTCTTGTGATAGATGTGATAGATGAGTGTTATGAGCGTTAGATGAGTGATAGATGAGCGTTAGATGAGTGTTATATGAGCGTTATATGAGCATTAGATGAGCGTTATATGAGTGTTAGATGAGTGTTATATGAGCGTTATATGAGTGTTATATGAGCGTTATATGAGCGTTAGAGGAGCGTTATATGAGCGTTATATGAGTGTTATATGAGCGTTATATGAGCGT

Function

GO:

id name namespace
GO:0006071 glycerol metabolic process biological_process
GO:0019432 triglyceride biosynthetic process biological_process
GO:0005789 endoplasmic reticulum membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0004144 diacylglycerol O-acyltransferase activity molecular_function

KEGG:

id description
K11160 DGAT2; diacylglycerol O-acyltransferase 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU309468 lncRNA upstream 8262 771258 ~ 773261 (+) True G261190
TU309437 lncRNA upstream 68455 711424 ~ 713068 (+) True G261176
TU309434 lncRNA upstream 75241 705543 ~ 706282 (+) True G261173
XR_004579793.1 lncRNA upstream 97159 663012 ~ 684364 (+) True LOC117599335
TU309405 lncRNA upstream 110557 657405 ~ 670966 (+) False LOC117599335
TU309461 lncRNA downstream 107 794200 ~ 795370 (+) True G261183
TU309471 lncRNA downstream 21294 815387 ~ 815836 (+) True G261193
TU309477 lncRNA downstream 61441 855534 ~ 855826 (+) True G261199
TU309479 lncRNA downstream 75861 869954 ~ 873772 (+) True G261201
TU309761 lncRNA downstream 85584 879677 ~ 941189 (+) True G261415
XM_034312870.1 mRNA upstream 6245 763077 ~ 775278 (+) True mogat2
XM_026910340.2 mRNA upstream 37532 730018 ~ 743991 (+) True umodl1
XM_026910342.2 mRNA upstream 37532 730018 ~ 743991 (+) False umodl1
XM_026910347.2 mRNA upstream 62197 716205 ~ 719326 (+) True atg101
XM_034312450.1 mRNA upstream 126283 637618 ~ 655240 (+) False trim37
XM_034312866.1 mRNA downstream 2746 796839 ~ 865864 (+) True uvrag
XM_026910334.2 mRNA downstream 297986 1092079 ~ 1094333 (+) True and3
XM_026910335.2 mRNA downstream 307708 1101801 ~ 1111982 (+) False vamp2
XM_026910332.2 mRNA downstream 325437 1119530 ~ 1128252 (+) True pcolcea
XM_034312493.1 mRNA downstream 566617 1360710 ~ 1387400 (+) True fgf11b
TU309447 other upstream 53798 725827 ~ 727725 (+) True G261178
TU309320 other upstream 268750 507497 ~ 512773 (+) False bcl7ba
TU309389 other upstream 295323 482435 ~ 486200 (+) False prdm15
TU309343 other upstream 300812 444767 ~ 480711 (+) True G261104
XR_004579859.1 other upstream 469537 311476 ~ 311986 (+) True LOC117599405
trnal-uag_7 other downstream 300758 1094851 ~ 1094932 (+) True trnal-uag_7
trnal-aag_10 other downstream 305279 1099372 ~ 1099453 (+) True trnal-aag_10
TU309774 other downstream 307696 1101789 ~ 1112278 (+) True vamp2
TU309863 other downstream 411898 1205991 ~ 1237132 (+) True G261503
XR_004579765.1 other downstream 620411 1414504 ~ 1419489 (+) False ponzr2

Expression Profile