RNA id: XM_034312872.1


Basic Information

Item Value
RNA id XM_034312872.1
length 1329
RNA type mRNA
GC content 0.39
exon number 3
gene id si:ch211-113d22.2
representative True

Chromosome Information

Item Value
chromosome id NC_047611.1
NCBI id CM018557.1
chromosome length 24879021
location 19173255 ~ 19178848 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TTAGAGCTGTTAAGCCGTGAAAAGCTCACACTCAGATTAGAGGGGGAAGATTCACACGTCTGAACGTCTACACTCGTCCTCCGTCTGCTCAAACATGAAGACACTGGTCATTCTGCCGCTGCTGCTGAGCGCCGTGTTACACAGCGAGGCACTGAAGTGTTATACCTGCATCGCGCCCAATCAGGAGGAGTGTAACCGACAAGGCTTGAGTGTATGTCCTGCTAACTCAGACGCCTGTGCCACCATCACAGGGGCCaACTCAGTGATGAAGTCCTGCTCCTTTAAATCGTTCTGTGATAAATCCCACATGAGTAATGGAGGAATGAAGCTGGAGTGCTGCTTTAGTGATGAGTGTAATGGGCCGCACCGTGCTCACAGTCACGGAGAACACAGCAACGGCGCTGTGGCTCTGGGTTCCAGCCTGAACCTGCTCCTGGGAGTGCTGATGATCCGAGCCGCTGTCAACGTCATGTAAAATCCTGTAAacaccagaaaaaaacactataagacatattatttagtattGTAGCATGAGCTTTTGGAATATGCATGGGTTAACAGTGTTTCTAGTGATAGTACATTAACAGTCAAAAGTTTTGGACACACCTTCTCTTCATTTTAactattttctactattttataacaatggTGAAGATattaaaactacaaaatgtcaaatatcaaatatagtAAGGCACTGACCAATAGTGTTGaccaaaactattttatatttaaaattcttaACAGTGTTCCTGGTGAAGCCttgcacactcttggcattTTTTCAACCAGCTTCATGAATAAGCTTCTTTTCTTAACCTTCGCAGATAGACTGAGGTCTAAATAGAAACTGCTTATTTGGTAAAGCAATTTAAATTTCAgggaaaaaatatttcttaagcaaataaatttcagaaattaagaaataaatttataccTGGACTTCactatttacattattttaaaactaacTAGTTTCAAAATGTCTTTATAACAATGAAAAGTTAAATCTGCTGCGTCCAAACTTTTAACTGGTAGTGTACGTTGATTTGAGTGTGTATTAATGGAAATAATTTGAGTCAGATAGatttccattacttgttagctatatTAACCTCAGACGTCGAGTATAAAACTTTGACACAAACTTAGAACGTTATGTAAATTTTCCTTTTGGCCCTGTTCTACACATTTTAGTGTGTTTTGTACTTTAACACTCCTGATTCAGCTGCTCACTTCATTAACACACCTTTTATGAGaataaaaggtgtgtgtggtagagaaagaaaacactaaactgtgcagaaCATGTGGTGGATTAAGATCTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU321792 lncRNA upstream 161023 19011175 ~ 19012232 (+) True G271576
TU321787 lncRNA upstream 209475 18963355 ~ 18963780 (+) True G271571
TU321785 lncRNA upstream 211700 18961302 ~ 18961555 (+) True G271569
TU321784 lncRNA upstream 212488 18960528 ~ 18960767 (+) True G271568
TU321754 lncRNA upstream 212988 18958168 ~ 18960267 (+) True G271540
TU322140 lncRNA downstream 50213 19229061 ~ 19229423 (+) True G271853
TU322180 lncRNA downstream 154998 19333846 ~ 19335880 (+) True G271884
TU322221 lncRNA downstream 303649 19482497 ~ 19484904 (+) True G271923
TU322222 lncRNA downstream 310710 19489558 ~ 19494875 (+) False LOC113544004
TU322223 lncRNA downstream 317317 19496165 ~ 19496866 (+) False LOC113544004
XM_026942672.2 mRNA upstream 4663 19137237 ~ 19168592 (+) False tacc1
XM_034312663.1 mRNA upstream 4663 19149446 ~ 19168592 (+) True tacc1
XM_034312664.1 mRNA upstream 4663 19149503 ~ 19168592 (+) False tacc1
XM_026942670.2 mRNA upstream 4663 19149503 ~ 19168592 (+) False tacc1
XM_026942671.2 mRNA upstream 4663 19149505 ~ 19168592 (+) False tacc1
XM_026942778.2 mRNA downstream 3499 19182347 ~ 19227923 (+) True loxl2a
XM_026942777.2 mRNA downstream 3500 19182348 ~ 19227923 (+) False loxl2a
XM_026942767.2 mRNA downstream 79783 19258631 ~ 19274853 (+) True sfrp1b
XM_026942743.2 mRNA downstream 190982 19369830 ~ 19375335 (+) True pbdc1
XM_034312671.1 mRNA downstream 197244 19376092 ~ 19414627 (+) True LOC113544086
trnas-uga_9 other upstream 236285 18936889 ~ 18936970 (+) True trnas-uga_9
trnas-uga_8 other upstream 237267 18935907 ~ 18935988 (+) True trnas-uga_8
trnas-uga_7 other upstream 237577 18935597 ~ 18935678 (+) True trnas-uga_7
trnas-uga_6 other upstream 238042 18935132 ~ 18935213 (+) True trnas-uga_6
trnas-cga_2 other upstream 238290 18934884 ~ 18934965 (+) True trnas-cga_2
TU322151 other downstream 62861 19241709 ~ 19243905 (+) True G271863
XR_004579823.1 other downstream 197249 19376097 ~ 19409418 (+) False LOC113544086
TU322206 other downstream 220750 19399598 ~ 19404927 (+) False LOC113544086
TU322526 other downstream 603579 19782427 ~ 19786819 (+) False LOC113543969
TU322527 other downstream 603579 19782427 ~ 19786819 (+) True LOC113543969

Expression Profile