RNA id: XM_034312902.1


Basic Information

Item Value
RNA id XM_034312902.1
length 2382
RNA type mRNA
GC content 0.56
exon number 13
gene id slc27a4
representative True

Chromosome Information

Item Value
chromosome id NC_047611.1
NCBI id CM018557.1
chromosome length 24879021
location 23789432 ~ 23809829 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CACTCAGCGCTTAGTGCCTGCGAACAGGGAAGAGCGGGTTTAGCTAAGAAAATTATAAGGTCATTTTGAATTACCGGGAGCTACAGTAAATCTGCcatttccaaagaaaaaaaaaattaataatagtaataataataataataatggagcAGGTGAAACGGCGACGGATCGCAGCGCGCGCATGATTCACCGGAattgatatttaaataaaaaaagaaagggaaaaaaacccagTATAGAGGTTTGGTTATAAGCTGATCAAGGTGGGAATTGAACAGAAAGGTGGTGCTAATACATCGTGACCGACTGCGGATACACACGAGGCGAGgatgttgCGCCTGGCATGTACCACCGTCCTGCTCTTCGTGCTCAGGCTGGTCCTGACTTTGCCCTGGCTCCAGGTTCTTCCTGCCGTCCTCATCTTCTTCCTGGGAACCGGAGGATGGAACTCGCTGCGTGTGTTTATGAAGACCATCAGCCGAGACCTGCATGCGGCCGTGGTGCTGCTGAAAGTGAAGCTGAACGTGAAGCGACACCTGCGCGAGTCTAACACCATCCCCAAGATCTTCGCCCAGACGGTACGGAAGTACGGCGACAAGACGGCGCTGATCTTCGAGGGCACGGGCGAGCGGTGGAGCTTCAGGCAGCTGGACGAGTACTCGAACCGCGTGGCCAACCTGCTGCACGAGCGCGGCTTCAGGGAGGGCGACGTGGTGGCTCTGTTCATGGAGAACCGCTCGCAGTACGTGGGTCTGTGGCTGGGCATGGCCAAGATCGGCATCGAGGCGGCGCTCATCAACTTCAACCTGCGTCTGGAGGCCCTGGTGCACTGCGTCAACATCTCCAACGCCAAAGCCGTGGTGTTCGGCAGCGAGCTGACCAAAGcgatGTGTGAGGTGCACAGCTCCATGGGGAAAACCGTAAAGCTCTTCTGTTCTGGTGACTGGGATCCTGAACGAGTACCTGAAGGAACCGAGTGTTTGGAGCCGCTCCtccaggccacgcccacacacaAGCCCAGCCACCCACAGCGCGGCTTCACCGATCGTCTCTTCTACATTTACACATCTGGAACAACTGGAATGCCCAAAGCTGCCATCGTCGTCCACAGCAGgtattaCCGTATGGCTGCTCTGGTGTATTACGGTTTCAGGATGCGGTCGGATGACGTGCTGTACGACTGCCTCCCGCTTTATCACTCAGCAGGGAACATCGTGGGCGTCGGTCAGTGTCTGATCCACGGCATGACCGTCGTCATCAAGAGGAAGTTCTCAGCGTCCAAATTCTGGGAGGATTGCATCAAATACAACTGCACGataGTGCAGTATATCGGTGAGATCTGTCGTTATTTGTTGAATCAGCCGCTGCGGGATGTGGAGCAGCGTCACTGTGTGCGCATGGCGCTGGGTAACGGTCTGCGTCAGTCCATCTGGGAGGAGTTCATGCAGCGCTTTAACGTCCCGCAGATCGCCGAGTTCTACGGAGCCACCGAGTGTAACTGCAGCCTTGGCAACTTCGATAACAAGaccgGTGCGTGTGGCTTTAACAGCCGTATCCTGCCCTTCGTCTACCCCATCCGTCTGGTCAGAGTGGACGAGGAGACCATGGAGCTCATCAGAGGACCTGATGGAGTGTGTATACCGTGTGGTCCAGGTGAACCGGGTCAGCTGGTGGGCAGAATCATCCAGAACGACCCGCTGAGACGCTTCGACGGCTACGTTAACCAGTCCGCCACCAGTAAAAAGATCGCACAGAACGTCTTCAAGAAAGGGGACAGCGCCTACCTGTCAGGAGACGTGCTGGTGATGGACGAGTTCGGCTACATGTACTTCAGAGACCGTACGGGAGACACATTCCGCTGGAAGGGTGAGAACGTCTCCACTACTGAGGTGGAAGGAACGCTGAGCCGCCTGCTGGAGATGAAGGACGTGGTGGTGTACGGTGTGGAGGTTCCAGGCGCGGAGGGAAAAGCCGGCATGGCGGCCATCGCTGACCCGGACCACGCCACAGACCTGGGGAAGTTCAGCAGGGAGCTGGAGAAGGCGCTGCCCCCCTACGCCCGCCCGGTGTTCCTGCGCTTCCTGCCTGAGGTCAACAAGACCGGAACCTTCAAGTTCCAGAAGACGGAGCTACGCCGTGACGGCTTCGACCCGACCGTGGTGTCCGATAAGCTCTACTTCCTGGACTGCACTAAAGGATGCTACGTTGAGCTGGACGCCGAACTCCACCGTAGCATCGTCTCGGGGAAGCAAAAAGTATAAAGAAACCACTGCCGACTCCGCCCACTTCCTCAACCTTCCATCATCACACCCCTCCCTAGGAACCTTCCAACGCCTCGCCCCTCGTTACCTCAGCAACCGCAGTGAGGGGCAGCAGGAGCAG

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0003824 catalytic activity molecular_function

KEGG:

id description
K08745 SLC27A1_4, FATP1_4; solute carrier family 27 (fatty acid transporter), member 1/4

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU324813 lncRNA upstream 112205 23675643 ~ 23677227 (+) True G274161
TU324528 lncRNA upstream 390901 23396808 ~ 23398531 (+) True G273900
TU324506 lncRNA upstream 455883 23286000 ~ 23333549 (+) True G273880
TU324489 lncRNA upstream 509643 23270148 ~ 23279789 (+) True G273865
TU324841 lncRNA downstream 42168 23851997 ~ 23852218 (+) True G274186
TU324847 lncRNA downstream 49995 23859824 ~ 23860703 (+) True G274192
TU324848 lncRNA downstream 59025 23868854 ~ 23869197 (+) True G274193
TU324880 lncRNA downstream 128204 23938033 ~ 23940111 (+) False cdc37l1
TU324897 lncRNA downstream 135787 23945616 ~ 23946507 (+) True G274239
XM_026942790.2 mRNA upstream 2649 23781356 ~ 23786783 (+) True swi5
XM_026942637.2 mRNA upstream 12399 23755117 ~ 23777033 (+) True fam163ba
XM_026942634.2 mRNA upstream 67914 23683550 ~ 23721518 (+) True sardh
XM_026942864.2 mRNA upstream 112802 23662619 ~ 23676630 (+) True cercam
XM_034312337.1 mRNA upstream 149085 23624137 ~ 23640347 (+) True urm1
XM_026942804.2 mRNA downstream 5847 23815676 ~ 23831525 (+) True ptgdsa
XM_034312903.1 mRNA downstream 25338 23835167 ~ 23845395 (+) True ambp
XM_034312838.1 mRNA downstream 128149 23937978 ~ 23940132 (+) True cdc37l1
XM_034312839.1 mRNA downstream 161609 23971438 ~ 24011050 (+) True ugcg
XM_026942828.2 mRNA downstream 293244 24103073 ~ 24112853 (+) True hsdl2
TU324491 other upstream 428929 23321571 ~ 23360503 (+) False LOC113543986
TU324492 other upstream 515262 23265453 ~ 23274170 (+) False rc3h2
TU324289 other upstream 660112 23125367 ~ 23129320 (+) False lhx6
XR_003404475.2 other upstream 1123862 22622428 ~ 22665570 (+) True lrrtm4l1
TU323909 other upstream 1414557 22369274 ~ 22374875 (+) False tmem230a
TU324879 other downstream 293260 24103089 ~ 24104595 (+) False hsdl2
TU325154 other downstream 417552 24227381 ~ 24228678 (+) False LOC117599389
TU325389 other downstream 720149 24529978 ~ 24587552 (+) False erbin

Expression Profile