RNA id: XM_034312917.1


Basic Information

Item Value
RNA id XM_034312917.1
length 1892
RNA type mRNA
GC content 0.46
exon number 14
gene id cwc27
representative True

Chromosome Information

Item Value
chromosome id NC_047611.1
NCBI id CM018557.1
chromosome length 24879021
location 24310031 ~ 24359123 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AAAAGCTGTGACACCATGAATGAATCCTAAATGgcgtctttttttaaatcaagtgcactacatagagaGTAGAAACCTTTATTTCATAtcatatgtagtgcactttatttaGTGAATTTATTTAGCAGTGTTATTTAGGATAGAGCAACAAACGCAGCACACTGCTGTATTTTGCGACGTGtttttgtcagtgtgtttattagtgtgtttattcctcttaaaattaatttaacagcTAATAAACCTTCAAAATGagtaatatttatattcaggAGCCACCAACGAACGGGAAGGTTTTAATAAAGACCTCAGCAGGTGATATAGATGTAGAGCTTTGGTCTAAAGAAGCTCCTAAAGCCTGCAGGAACTTCATTCAGCTCTGTATggaagGTTACTACAACGGAACCATTTTCCACCGCGTGGTTCCAGATTTCATCATTCAGGGCGGTGATCCGACTGGCACTGGGACCGGGGGGGAGTCTGTCTACGGCCGTCCTTTTAAGgatgaGTTCCACTCCAGGTTGCGGTTTATCAGGAGAGGTTTGGTGGCGATGGCTAACGCTGGACCTCACGATAACGGCAGCCAGTTTTTCTTCACTCTGGGCCGAGCCGACGAACTCAACAACAAGCACACTATATTCGGAAAGGTGACGGGTGACACGGTGTACAACATGTTACGGTTAGCGGAGGTGGAGTGTGACAGCAACGAGCGACCGCTAAAGCCACACAAGATCAGATCTACAGAGGTCTTACATTCTCCCTTCGATGACATCGTGCCTCGTGAGATACGAgtcaagaaagagaaacacaaagaggagGGAAAGAAATCTCAGTCCAAGGCAACGAAAAATTTTAGTTTGCTGTCATTTGGTGAGGaagcagaagaggaagaggaaatggTCACTCAAGTCAGCCAGACCATGAAAGGAAAAAGTAAAAGCAGTCATGACCTTCTGAAGGATGACCCCAAGCTGAGCTCCGTTCCGCCGTGGACAGGTGATCAGACCAAAACGAGTCAAGGAGACGCTTCTGAGGGAGACGATGAAACACAGGaccaggatgatgatgatgatgatgatgacgatgacgatgatgatgaaaaaatgaGGAAGAAGGAAATGAGAGAGCGCATCTCAAAAAAGCTGAAGAAAGAGaaggtggaggaggagaagtCTGAGGCGCGGGAGGAGACGGAAAAGAAGAGCAGTCGCAGCGATGAACTCCGTAAAGAAGCTCGTCAGCTGAAGAAGGAACTCCTCGCGATCAAGCAACGAAAGGAGGAGAGGATGAAGCCGGAGGAGGACAGCGCAGGTGAGAAGAAAGCGCCGAGCGAGGCCGTGTCCGAGTACCTGGAGAGCAAGAAGAAATACGAGGAAATGAGGAAGCAAAAGCTGAAGAAGGGTTCGAGCAGAGAGGCGCAGACACTCGCTCTTCTGGAGAGTTTTAAGTCCAAGCTGTCATCAGCTATTTCTGAAACCCCCGAGACGCCTGACGACGAGGAGCTGGAAGAGGACGATGATAAAGGATGGTGGCGACACGTGCTGCATTTTGATGAACAATCCAGGAAAGTGAAGGACGCTAACATGCAGGACGAAGACACGTTTGAGATCTACGACCCGCGCAACCCCGTCAACAAACGCAGACGAGAGGAGAGCAAGAAGCTGCTGAAGGAGAAGAAGGCCAAGAGGTGATCTCCTCATCATCACATCGTTCCTCTCACGCTGTATATATTCTGTTCAGGATGGACTTCACTCTCGCGCTCGCTTAACATCACAAACATGTCTTTGGGTAAGAGATAAAATAAAGGACACGTGAGAAAATATGAAACCTGATCTTCTCAGAATGAGAACTGGAGTTGTGTCCATTTAATAAAGGATTGCTTTTTTCTAAAA

Function

GO: NA

KEGG:

id description
K12737 SDCCAG10; peptidyl-prolyl cis-trans isomerase SDCCAG10

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU325166 lncRNA upstream 48455 24257907 ~ 24261576 (+) False G274457
TU325164 lncRNA upstream 48489 24259709 ~ 24261542 (+) True G274457
TU325153 lncRNA upstream 83224 24226154 ~ 24226807 (+) False LOC117599389
TU325129 lncRNA upstream 184818 24124736 ~ 24125213 (+) True G274431
TU324954 lncRNA upstream 199293 24107648 ~ 24110738 (+) True G274289
TU325323 lncRNA downstream 43900 24403023 ~ 24491201 (+) True G274583
TU325373 lncRNA downstream 132292 24491415 ~ 24491856 (+) True G274624
TU325331 lncRNA downstream 136787 24495910 ~ 24498527 (+) False trappc13
TU325332 lncRNA downstream 136787 24495910 ~ 24498642 (+) False trappc13
TU325393 lncRNA downstream 178007 24537130 ~ 24537736 (+) True G274639
XM_034312929.1 mRNA upstream 13306 24276082 ~ 24296725 (+) True cops4
XM_026942694.2 mRNA upstream 57963 24233760 ~ 24252068 (+) True LOC113544070
XM_034312594.1 mRNA upstream 63248 24233760 ~ 24246783 (+) False LOC113544070
XM_034312840.1 mRNA upstream 77212 24226799 ~ 24232819 (+) True LOC117599389
XM_026942828.2 mRNA upstream 197178 24103073 ~ 24112853 (+) True hsdl2
XM_034312584.1 mRNA downstream 97913 24457036 ~ 24465100 (+) True ppwd1
XM_034312919.1 mRNA downstream 121476 24480599 ~ 24497242 (+) True trappc13
XM_034312920.1 mRNA downstream 121476 24480599 ~ 24497242 (+) False trappc13
XM_034312918.1 mRNA downstream 121476 24480599 ~ 24495654 (+) False trappc13
XM_034312566.1 mRNA downstream 144740 24503863 ~ 24525223 (+) True nln
TU325154 other upstream 81353 24227381 ~ 24228678 (+) False LOC117599389
TU324879 other upstream 205436 24103089 ~ 24104595 (+) False hsdl2
TU324491 other upstream 949528 23321571 ~ 23360503 (+) False LOC113543986
TU324492 other upstream 1035861 23265453 ~ 23274170 (+) False rc3h2
TU324289 other upstream 1180711 23125367 ~ 23129320 (+) False lhx6
TU325389 other downstream 170855 24529978 ~ 24587552 (+) False erbin

Expression Profile