Gene
RNA
| Item | Value |
|---|---|
| RNA id | XR_004579783.1 |
| length | 522 |
| lncRNA type | inter_gene |
| GC content | 0.41 |
| exon number | 4 |
| gene id | LOC113544143 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_047611.1 |
| NCBI id | CM018557.1 |
| chromosome length | 24879021 |
| location | 19817178 ~ 19825232 (+) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| id | name | namespace |
|---|---|---|
| GO:0061783 | peptidoglycan muralytic activity | molecular_function |
| GO:0003796 | lysozyme activity | molecular_function |
| id | description |
|---|---|
| ko00730 | Thiamine metabolism |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU322223 | lncRNA | upstream | 320312 | 19496165 ~ 19496866 (+) | False | LOC113544004 |
| TU322222 | lncRNA | upstream | 322303 | 19489558 ~ 19494875 (+) | False | LOC113544004 |
| TU322221 | lncRNA | upstream | 332274 | 19482497 ~ 19484904 (+) | True | G271923 |
| TU322180 | lncRNA | upstream | 481298 | 19333846 ~ 19335880 (+) | True | G271884 |
| TU322140 | lncRNA | upstream | 587755 | 19229061 ~ 19229423 (+) | True | G271853 |
| TU322559 | lncRNA | downstream | 97803 | 19923035 ~ 19923178 (+) | False | gfra2b |
| TU322558 | lncRNA | downstream | 115814 | 19941046 ~ 19943499 (+) | False | gfra2b |
| TU322611 | lncRNA | downstream | 140895 | 19966127 ~ 20008197 (+) | True | G272246 |
| TU322615 | lncRNA | downstream | 398245 | 20223477 ~ 20226693 (+) | True | G272249 |
| TU322678 | lncRNA | downstream | 414662 | 20239894 ~ 20240346 (+) | True | G272305 |
| XM_034312420.1 | mRNA | upstream | 11383 | 19792704 ~ 19805795 (+) | True | LOC117595711 |
| XM_026942526.2 | mRNA | upstream | 30347 | 19783324 ~ 19786831 (+) | False | LOC113543969 |
| XM_026942462.2 | mRNA | upstream | 151854 | 19649463 ~ 19665324 (+) | True | LOC113543930 |
| XM_034312298.1 | mRNA | upstream | 267984 | 19540378 ~ 19549194 (+) | True | LOC113544003 |
| XM_034312834.1 | mRNA | upstream | 276902 | 19530877 ~ 19540276 (+) | True | LOC117599386 |
| XM_034312380.1 | mRNA | downstream | 876 | 19826108 ~ 19830268 (+) | True | LOC117599326 |
| XM_026942865.2 | mRNA | downstream | 28322 | 19853554 ~ 19943505 (+) | True | gfra2b |
| XM_026942564.2 | mRNA | downstream | 193134 | 20018366 ~ 20023714 (+) | True | LOC113543999 |
| XM_026942659.2 | mRNA | downstream | 225386 | 20050618 ~ 20110301 (+) | True | itga1 |
| XM_026942459.2 | mRNA | downstream | 292293 | 20117525 ~ 20123709 (+) | True | sub1a |
| TU322529 | other | upstream | 11383 | 19793912 ~ 19805795 (+) | True | G272180 |
| TU322530 | other | upstream | 11383 | 19793912 ~ 19805795 (+) | False | G272180 |
| TU322533 | other | upstream | 11383 | 19799022 ~ 19805795 (+) | False | G272180 |
| XR_004579787.1 | other | upstream | 16660 | 19797773 ~ 19800518 (+) | True | LOC113544133 |
| XR_003404464.2 | other | upstream | 30347 | 19782580 ~ 19786831 (+) | False | LOC113543969 |
| XR_004579782.1 | other | downstream | 730 | 19825962 ~ 19830268 (+) | False | LOC117599326 |
| trnae-cuc_36 | other | downstream | 23523 | 19848755 ~ 19848826 (+) | True | trnae-cuc_36 |
| TU322750 | other | downstream | 573048 | 20398280 ~ 20398947 (+) | True | G272367 |
| TU322768 | other | downstream | 598167 | 20423399 ~ 20429143 (+) | True | G272374 |
| TU322810 | other | downstream | 715093 | 20540325 ~ 20542954 (+) | True | G272408 |
