Gene
RNA
| Item | Value |
|---|---|
| RNA id | XR_004579787.1 |
| length | 317 |
| RNA type | misc_RNA |
| GC content | 0.45 |
| exon number | 4 |
| gene id | LOC113544133 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_047611.1 |
| NCBI id | CM018557.1 |
| chromosome length | 24879021 |
| location | 19797773 ~ 19800518 (+) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| id | name | namespace |
|---|---|---|
| GO:0005215 | transporter activity | molecular_function |
| id | description |
|---|---|
| ko00053 | Ascorbate and aldarate metabolism |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU322223 | lncRNA | upstream | 300907 | 19496165 ~ 19496866 (+) | False | LOC113544004 |
| TU322222 | lncRNA | upstream | 302898 | 19489558 ~ 19494875 (+) | False | LOC113544004 |
| TU322221 | lncRNA | upstream | 312869 | 19482497 ~ 19484904 (+) | True | G271923 |
| TU322180 | lncRNA | upstream | 461893 | 19333846 ~ 19335880 (+) | True | G271884 |
| TU322140 | lncRNA | upstream | 568350 | 19229061 ~ 19229423 (+) | True | G271853 |
| XR_004579783.1 | lncRNA | downstream | 16660 | 19817178 ~ 19825232 (+) | True | LOC113544143 |
| TU322531 | lncRNA | downstream | 17949 | 19818467 ~ 19825232 (+) | False | G272180 |
| TU322559 | lncRNA | downstream | 122517 | 19923035 ~ 19923178 (+) | False | gfra2b |
| TU322558 | lncRNA | downstream | 140528 | 19941046 ~ 19943499 (+) | False | gfra2b |
| TU322611 | lncRNA | downstream | 165609 | 19966127 ~ 20008197 (+) | True | G272246 |
| XM_026942526.2 | mRNA | upstream | 10942 | 19783324 ~ 19786831 (+) | False | LOC113543969 |
| XM_026942462.2 | mRNA | upstream | 132449 | 19649463 ~ 19665324 (+) | True | LOC113543930 |
| XM_034312298.1 | mRNA | upstream | 248579 | 19540378 ~ 19549194 (+) | True | LOC113544003 |
| XM_034312834.1 | mRNA | upstream | 257497 | 19530877 ~ 19540276 (+) | True | LOC117599386 |
| XM_034312833.1 | mRNA | upstream | 276996 | 19489206 ~ 19520777 (+) | True | LOC113544004 |
| XM_034312380.1 | mRNA | downstream | 25590 | 19826108 ~ 19830268 (+) | True | LOC117599326 |
| XM_026942865.2 | mRNA | downstream | 53036 | 19853554 ~ 19943505 (+) | True | gfra2b |
| XM_026942564.2 | mRNA | downstream | 217848 | 20018366 ~ 20023714 (+) | True | LOC113543999 |
| XM_026942659.2 | mRNA | downstream | 250100 | 20050618 ~ 20110301 (+) | True | itga1 |
| XM_026942459.2 | mRNA | downstream | 317007 | 20117525 ~ 20123709 (+) | True | sub1a |
| XR_003404464.2 | other | upstream | 10942 | 19782580 ~ 19786831 (+) | False | LOC113543969 |
| TU322526 | other | upstream | 10954 | 19782427 ~ 19786819 (+) | False | LOC113543969 |
| TU322527 | other | upstream | 10954 | 19782427 ~ 19786819 (+) | True | LOC113543969 |
| XR_004579823.1 | other | upstream | 388355 | 19376097 ~ 19409418 (+) | False | LOC113544086 |
| XR_004579782.1 | other | downstream | 25444 | 19825962 ~ 19830268 (+) | False | LOC117599326 |
| trnae-cuc_36 | other | downstream | 48237 | 19848755 ~ 19848826 (+) | True | trnae-cuc_36 |
| TU322750 | other | downstream | 597762 | 20398280 ~ 20398947 (+) | True | G272367 |
| TU322768 | other | downstream | 622881 | 20423399 ~ 20429143 (+) | True | G272374 |
| TU322810 | other | downstream | 739807 | 20540325 ~ 20542954 (+) | True | G272408 |
