Gene
RNA
| Item | Value |
|---|---|
| RNA id | XR_004579790.1 |
| length | 600 |
| lncRNA type | inter_gene |
| GC content | 0.44 |
| exon number | 3 |
| gene id | LOC117599333 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_047611.1 |
| NCBI id | CM018557.1 |
| chromosome length | 24879021 |
| location | 9042354 ~ 9044626 (+) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| id | name | namespace |
|---|---|---|
| GO:0006886 | intracellular protein transport | biological_process |
| GO:0016192 | vesicle-mediated transport | biological_process |
| GO:0030130 | clathrin coat of trans-Golgi network vesicle | cellular_component |
| GO:0030132 | clathrin coat of coated pit | cellular_component |
| GO:0005198 | structural molecule activity | molecular_function |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU315145 | lncRNA | upstream | 68916 | 8972553 ~ 8973438 (+) | True | G265981 |
| TU315089 | lncRNA | upstream | 116853 | 8912979 ~ 8925501 (+) | True | G265928 |
| TU315071 | lncRNA | upstream | 161301 | 8880519 ~ 8881053 (+) | True | G265910 |
| TU315067 | lncRNA | upstream | 162933 | 8879201 ~ 8879421 (+) | True | G265906 |
| TU315065 | lncRNA | upstream | 170650 | 8871114 ~ 8871704 (+) | True | G265904 |
| TU315175 | lncRNA | downstream | 10155 | 9054781 ~ 9054998 (+) | True | G266010 |
| TU315190 | lncRNA | downstream | 14769 | 9059395 ~ 9060691 (+) | True | G266017 |
| XR_004579832.1 | lncRNA | downstream | 17956 | 9062582 ~ 9065301 (+) | True | LOC117599365 |
| TU315209 | lncRNA | downstream | 113788 | 9158414 ~ 9159810 (+) | True | G266036 |
| XR_003403580.2 | lncRNA | downstream | 165205 | 9209831 ~ 9214419 (+) | False | LOC113535228 |
| XM_026909772.2 | mRNA | upstream | 310369 | 8715429 ~ 8731985 (+) | True | rnft1 |
| XM_026944007.2 | mRNA | upstream | 688513 | 8329705 ~ 8353841 (+) | False | LOC113544929 |
| XM_034312463.1 | mRNA | upstream | 825086 | 8200080 ~ 8217268 (+) | True | LOC117595648 |
| XM_026943735.1 | mRNA | upstream | 854744 | 8176891 ~ 8187610 (+) | False | tmem167a |
| XM_026943628.2 | mRNA | upstream | 1098226 | 7937883 ~ 7944128 (+) | False | cetn3 |
| XM_026909767.2 | mRNA | downstream | 27803 | 9072429 ~ 9076274 (+) | True | si:ch211-244c8.4 |
| XM_026927880.2 | mRNA | downstream | 90534 | 9135160 ~ 9151699 (+) | True | zdhhc20a |
| XM_026927881.2 | mRNA | downstream | 90535 | 9135161 ~ 9151699 (+) | False | zdhhc20a |
| XM_026928171.2 | mRNA | downstream | 172154 | 9216780 ~ 9252133 (+) | True | smyd4 |
| XM_026927841.2 | mRNA | downstream | 212317 | 9256943 ~ 9264111 (+) | True | LOC113534874 |
| TU314948 | other | upstream | 372557 | 8668814 ~ 8669797 (+) | True | G265807 |
| TU314836 | other | upstream | 402626 | 8633635 ~ 8639728 (+) | True | G265696 |
| XR_003404564.2 | other | upstream | 688513 | 8333490 ~ 8353841 (+) | False | LOC113544929 |
| TU315389 | other | downstream | 291175 | 9335801 ~ 9336290 (+) | True | G266161 |
| XR_003404427.2 | other | downstream | 375039 | 9419665 ~ 9424855 (+) | True | LOC113543674 |
| XR_004579762.1 | other | downstream | 375842 | 9420468 ~ 9424855 (+) | False | LOC113543674 |
| XR_004579824.1 | other | downstream | 659734 | 9704360 ~ 9754590 (+) | False | dclk1a |
| TU316249 | other | downstream | 1524402 | 10569028 ~ 10570705 (+) | True | G266868 |
