RNA id: XR_004579832.1


Basic Information

Item Value
RNA id XR_004579832.1
length 1698
lncRNA type inter_gene
GC content 0.43
exon number 2
gene id LOC117599365
representative True

Chromosome Information

Item Value
chromosome id NC_047611.1
NCBI id CM018557.1
chromosome length 24879021
location 9062582 ~ 9065301 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

cgctgctgctgggggtgaatgaggatgggttcccttttgagcctggttcctctcaagGATGGtacagaaaggaaaagagagccATGAAGTTTGCTATCCCAAGAAATTTGCTGGAACCCACGGAAAATTCAAGCAACTGCTATTTCTGCATGGTGGACCCTTCCAAACTTCGGAGTGGCTATCAGGTATCCGGACCTTCATTCATCCATTGCCCCGGTGCCAAACTGCCCTGAGCTTCCTGTACCTTCTCCTCCAGACAGATAGCAGCCTTCTTCACAAGTAAGCAGCAAGTCAGAGAGCGAGGAAGATGATGTATATCCAGATTACAATTTCAGAGCTGGAGCTGAGGAGAGAAACCCATACCACCCCAACCAAAAAGACCTCAATGACTTGATCAGAGATCTTGGTCTCACCAAGTCTGATGGCAAACTTTTGATGTCTAGGTTCAAGCAGTGGAACTTGGTGGATGAAAGTGTGCAAGTCGCAAGTCCTTGGAAGCATCCCTAAGCTCTTTCCACCTTCTTCACCCATCAAGATGGGCTCTGCTTCTGCCACAATGTTCAAGGCAATGTTCAGTCTGCAATCAGAATCACCTGTAGCCTGAACAAGTGGCGCCTCTTCGCTGACATTGGTTTTTACCATGTTTGCCTGCTATCTTTGTCTTTGGGACAGCAGAGACACCAAGGCGCATTACCAAAGGCGTGACTGGCCGAGTTCACTGTGGGGAGGAACAACGTTAAGTGGGAGCCATTGCTGGACCCCTGGAAGGTGCTGATGccaccactgcacatcacaTTCGGTCTTATGAAACAATTTGTCACAGCTCTAAATAAGAGTCAACAGCCTTCAAGTACCTTCAATACTTCTTTCCTAAGCTGTCTGAGGCAAAATTTAAAGCCAGCGTCTTCGTCGGACCACAGATAAAGAAGATCCTGGAGTGCAAGGAATTCCTCAAGAAGCTCACTAGGAAGGAGAAAGAGGCTTGGAACAGGTTTGTTGCAGTGGTTCGGGCAATCACAAAGCCAAAAACTATATGGAGCTTGTTCAGACTCTGGTGAAGAACTATGGCACAATGGGCTGTAGGATGTCTCTCAAAGTCCATATTCTTGATGCTCATCTTGATAAATTCAATGAGAACATGGGAATATACTCAGAGGGGCAAGGCAAGCGCTTCCACTAGGATATACTGGACTTTGAACGCAGCTATTAAGGACGATATAACGAGAACATGATGGGAAACTATATATGGGGGCTGCTTTGTGAAAGCAGTTTACAAAATTCTAAATTTTTTGCAGTCGTTTTGGTGTAACCATTCACTTCTAGTTTTTTGTGGTCATTTTTGTGTAACTTTAGTATAAATACATGTTAAAAttcacatgtttttatttgactttatGTGAACGAAAGATGCAAAATTGCCCGTTTTCTCAATGAAAATAGGTAATTTTGAAAGTACCAATGTCCTGGTCACAAAAGCAAAGTATGAGTGGATTAATAGCCATTCTATACTTTTGAGGCATTAGCAATTAGAAAATAACACTTACTACCCAGGAACAAAAATTGTGTTACATAGTGTAATAGGGGAAAATCACACCTTGTATTATAtatcctgatctacttttcttacaAAACAATGTGTTGATATTGCAGTGGTTCCCTTTTGCTATCcttatgaaataaatgtattttttttattta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU315190 lncRNA upstream 1891 9059395 ~ 9060691 (+) True G266017
TU315175 lncRNA upstream 7584 9054781 ~ 9054998 (+) True G266010
XR_004579790.1 lncRNA upstream 17956 9042354 ~ 9044626 (+) True LOC117599333
TU315145 lncRNA upstream 89144 8972553 ~ 8973438 (+) True G265981
TU315089 lncRNA upstream 137081 8912979 ~ 8925501 (+) True G265928
TU315209 lncRNA downstream 93113 9158414 ~ 9159810 (+) True G266036
XR_003403580.2 lncRNA downstream 144530 9209831 ~ 9214419 (+) False LOC113535228
XR_004579818.1 lncRNA downstream 144537 9209838 ~ 9214419 (+) False LOC113535228
TU315231 lncRNA downstream 144547 9209848 ~ 9214447 (+) False LOC113535228
XR_003403583.2 lncRNA downstream 145399 9210700 ~ 9214419 (+) True LOC113535228
XM_026909772.2 mRNA upstream 330597 8715429 ~ 8731985 (+) True rnft1
XM_026944007.2 mRNA upstream 708741 8329705 ~ 8353841 (+) False LOC113544929
XM_034312463.1 mRNA upstream 845314 8200080 ~ 8217268 (+) True LOC117595648
XM_026943735.1 mRNA upstream 874972 8176891 ~ 8187610 (+) False tmem167a
XM_026943628.2 mRNA upstream 1118454 7937883 ~ 7944128 (+) False cetn3
XM_026909767.2 mRNA downstream 7128 9072429 ~ 9076274 (+) True si:ch211-244c8.4
XM_026927880.2 mRNA downstream 69859 9135160 ~ 9151699 (+) True zdhhc20a
XM_026927881.2 mRNA downstream 69860 9135161 ~ 9151699 (+) False zdhhc20a
XM_026928171.2 mRNA downstream 151479 9216780 ~ 9252133 (+) True smyd4
XM_026927841.2 mRNA downstream 191642 9256943 ~ 9264111 (+) True LOC113534874
TU314948 other upstream 392785 8668814 ~ 8669797 (+) True G265807
TU314836 other upstream 422854 8633635 ~ 8639728 (+) True G265696
XR_003404564.2 other upstream 708741 8333490 ~ 8353841 (+) False LOC113544929
TU315389 other downstream 270500 9335801 ~ 9336290 (+) True G266161
XR_003404427.2 other downstream 354364 9419665 ~ 9424855 (+) True LOC113543674
XR_004579762.1 other downstream 355167 9420468 ~ 9424855 (+) False LOC113543674
XR_004579824.1 other downstream 639059 9704360 ~ 9754590 (+) False dclk1a
TU316249 other downstream 1503727 10569028 ~ 10570705 (+) True G266868

Expression Profile