RNA id: XR_004579837.1


Basic Information

Item Value
RNA id XR_004579837.1
length 2299
lncRNA type inter_gene
GC content 0.37
exon number 3
gene id LOC117599376
representative True

Chromosome Information

Item Value
chromosome id NC_047611.1
NCBI id CM018557.1
chromosome length 24879021
location 13942685 ~ 13947023 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CAGCTCTTGTTTGAACAGTCGTATGTGTCAGAGGAATATTATCAAGTGGAGAGACTGCCACAGgctacagaagaaaaagagttTAGCAATGGAAGCTGTACAGCTCGGGGTAAAACTGCTGGACAAAAACTATAATAAGGTTCCACAGCTTTACGACTTAAAGTGGATGTCTCACTTTCACATTCAAACAAGGTCACAACTGACAACATATGGCAAGGCCACGCAATGATATACTGTGCCCTGAAGGAAGCGCCATCTCTCATCAGCCCATTGCGATGCTGGTCATATGAGCAGGGTGGATGATGACGATGCCCACTGCAGAGTTAATATCCAGGGTGCTCCGAGCTCTGTCAGAGGCCGACTCATTCCACTGATAAATGTCTGGTCCAGAACAGCCTTCAACTTATGGGAAATCTGTCTTTCTAAAAATTTAACCTCCTCTCTATGGCCCCCTTTTTCCCTGCCTTTACACTCCTGAAAGCCTCTTCCTCAACAATAACCTAATGGAtctgaataataaatgtgtggcagcctgggaaagtGCTGAAATGGTGAAATATTGTGTGAAGTTCTGAAAACAACCAGTTTTCCTGAATGAAATTATGTTTCTCCTTCATACATTTCCATCACAAgttacaacattttaaaatcatataacCTCCAgaagtgaaaaggaagaaaactgcATTGTTGAGCATTTAAAAATTCCATCCAGTTCAAATGAAAGACACCAACATACTGAACGTCTAAAAGCAAAATCTATGTATTAATTTTAGTTTAGCtgaatgtaatatgtaatgagtaagttatataaattataaatatgataatGAAAACTATGTTTTCAGCCTTTATTTATAGCCTACAGACTAATAGGCTATGAGAAACCCATTCCATGCAAAATACTATCCTTATCTTTATATTATCTCAATTGTAATTACTTTAACCTGATGTAATATTATCCTAAGATGACAGGATATAGCACACAAATACTCTGCCTATGTATACACTTCTAACCtaatatatttatggaaaaacaacaatagTGCCACTTTATCAAAGATTATACATTTCTGATGGGAAATGTGCAATTACTTTCACATCCATCATCATTATCAGTCTCTCATCACTTTAGGTAAATGTCAGTCATGGAATTTGATGAATAGGAGTATCATTGTTGCTCTTGACTCAACTGATCACTGTCCAAAAATGGGGATGACAGGTTAGAGGCTAATTAgattaactagctagctagctagctaacatctaCAGATAAATTCAATTACGTAGCCTGtaatttgtatttgcatttcttTATTTGGGTTTGAGTATAGCTCATGTCTGGTGTCTTCCATATTCTAACAGATTCTCTGCTGACGTATTTACAAGTAGCTTCAACCTCTCCATCCGCCTCATCTCAATTAGCTCCTGGTGATCAAGGTGACCCAGCCTCTCCATCCACTGCATCTCAACTAAAATCTCGCCTAGGGCGCCAACAGAGCCTGGGCTGGCCCTGACAACATGTACCACTTATCTATCTCCTTACATACATTCTACCCCACTTTATCTTATGGCAAGACATATCAGGTCAGAACACCCTGGTACAGAATACACTcacaaataataacaatcagcataaagagaataaaacagattttaagcaTAAGAGAAAGTAAAGGAAAATCAAATAGTTCCATAGTACGACATTGTCCTGTAACTAATGTCATCTTTGTAGAAAGCCAAGGCaagtaaatgaaaatgttttcatattgCGGTGAGATATAGTTCTGTTTTCTTAATATAGATGTAGATGTGTTATAAGcagaaaaacaaatccaaatttGGCCACACAGTTTTTCATCATTGTTAattgtttgccagaattcagccacagctgCACTTCATACGTTTTTCAAGCCATCAcacaaatatatgaaaatataaagtatactgtatttttgtgtAGGGTTCTCATTTTTGCTGCATGTGTGGGTCATCATCTCAAATACTTGTCTAATCGACATATTATTTAGATTTGTTTCAACCTTCAGAATGTTGCAGAattaggagggaaaaaaacattggctCCTCTCAGGCTCATCTCTATGGGTTGTATAAAAGTTTTATTGACTAAAAACCATGGAAGATGTGAGCTCAGTTACTGTCACTTACACAATTATAAGGGTGATTCCATTGTACAAATGAATTGTCACTTGTTCCAACAAAAGAAATGATAGTAGATAGTTAATTATATACACTTTTAGAAGTTGTTGAGTTTGCATCAAACACTTTAAACAGC

Function

GO:

id name namespace
GO:0001568 blood vessel development biological_process
GO:0001944 vasculature development biological_process

KEGG:

id description
ko04151 PI3K-Akt signaling pathway

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_004579829.1 lncRNA upstream 79050 13859796 ~ 13863635 (+) True LOC117599363
TU318179 lncRNA upstream 416300 13521152 ~ 13526385 (+) True G268587
TU318169 lncRNA upstream 467187 13432734 ~ 13475498 (+) False G268580
TU318956 lncRNA downstream 608463 14555486 ~ 14556349 (+) True G269251
TU318977 lncRNA downstream 649941 14596964 ~ 14597818 (+) True G269268
XR_004579796.1 lncRNA downstream 651584 14598607 ~ 14604363 (+) True LOC117599336
TU319137 lncRNA downstream 835938 14782961 ~ 14783685 (+) True G269393
TU319140 lncRNA downstream 838624 14785647 ~ 14786195 (+) True G269396
XM_034312338.1 mRNA upstream 3642 13914008 ~ 13939043 (+) True ltn1
XM_034312339.1 mRNA upstream 8301 13914008 ~ 13934384 (+) False ltn1
XM_026941712.2 mRNA upstream 37830 13899564 ~ 13904855 (+) True slc25a1a
XM_026942071.2 mRNA upstream 52704 13884461 ~ 13889981 (+) True si:dkey-175g6.2
XM_026941974.2 mRNA upstream 104606 13833427 ~ 13838079 (+) True c17h17orf49
XM_026941818.2 mRNA downstream 687468 14634491 ~ 14654548 (+) True paxbp1
XM_026941773.2 mRNA downstream 709939 14656962 ~ 14673374 (+) True slc7a1a
XM_026941776.2 mRNA downstream 713563 14660586 ~ 14673374 (+) False slc7a1a
XM_026941774.2 mRNA downstream 714304 14661327 ~ 14673374 (+) False slc7a1a
XM_026941775.2 mRNA downstream 714399 14661422 ~ 14673374 (+) False slc7a1a
XR_004579830.1 other upstream 626469 13315938 ~ 13316216 (+) True LOC113543571
TU316249 other upstream 3371980 10569028 ~ 10570705 (+) True G266868
XR_004579824.1 other upstream 4188095 9704360 ~ 9754590 (+) False dclk1a
XR_003404427.2 other upstream 4517830 9419665 ~ 9424855 (+) True LOC113543674
XR_004579771.1 other downstream 815290 14762313 ~ 14771073 (+) False vps36
trnam-cau_35 other downstream 2677886 16624909 ~ 16624980 (+) True trnam-cau_35
trnar-ccu_8 other downstream 2678377 16625400 ~ 16625472 (+) True trnar-ccu_8
trnam-cau_36 other downstream 2678459 16625482 ~ 16625553 (+) True trnam-cau_36
trnar-ccu_9 other downstream 2678950 16625973 ~ 16626045 (+) True trnar-ccu_9

Expression Profile