Gene
RNA
| Item | Value |
|---|---|
| RNA id | XR_004579851.1 |
| length | 807 |
| lncRNA type | inter_gene |
| GC content | 0.37 |
| exon number | 4 |
| gene id | LOC117599393 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_047611.1 |
| NCBI id | CM018557.1 |
| chromosome length | 24879021 |
| location | 6439897 ~ 6441877 (+) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU313354 | lncRNA | upstream | 155967 | 6218509 ~ 6283930 (+) | True | G264428 |
| TU313353 | lncRNA | upstream | 230886 | 6207990 ~ 6209011 (+) | True | G264427 |
| TU313352 | lncRNA | upstream | 244755 | 6194928 ~ 6195142 (+) | True | G264426 |
| TU313337 | lncRNA | upstream | 245216 | 6194074 ~ 6194681 (+) | False | LOC113544903 |
| TU313350 | lncRNA | upstream | 265205 | 6174314 ~ 6174692 (+) | True | G264424 |
| TU313800 | lncRNA | downstream | 259960 | 6701837 ~ 6702362 (+) | True | G264835 |
| TU313877 | lncRNA | downstream | 490001 | 6931878 ~ 6947742 (+) | True | G264903 |
| TU313866 | lncRNA | downstream | 520708 | 6962585 ~ 6962918 (+) | True | G264894 |
| TU313910 | lncRNA | downstream | 609180 | 7051057 ~ 7051362 (+) | True | G264933 |
| TU313911 | lncRNA | downstream | 609627 | 7051504 ~ 7051940 (+) | True | G264934 |
| XM_034312818.1 | mRNA | upstream | 186866 | 6197279 ~ 6253031 (+) | False | LOC113544768 |
| XM_026943617.2 | mRNA | downstream | 2377 | 6444254 ~ 6447190 (+) | True | elovl7b |
| XM_026943680.2 | mRNA | downstream | 5582 | 6447459 ~ 6458962 (+) | True | depdc1b |
| XM_034312421.1 | mRNA | downstream | 28073 | 6469950 ~ 6651852 (+) | False | LOC113544721 |
| XM_034312422.1 | mRNA | downstream | 28694 | 6470571 ~ 6651852 (+) | False | LOC113544721 |
| XM_026943642.2 | mRNA | downstream | 33774 | 6475651 ~ 6651852 (+) | False | LOC113544721 |
| TU313203 | other | upstream | 427995 | 6008800 ~ 6011902 (+) | True | G264336 |
| TU312620 | other | upstream | 1359280 | 5077881 ~ 5080617 (+) | False | triap1 |
| TU311007 | other | upstream | 3622639 | 2795548 ~ 2817258 (+) | False | pcp4a |
| XR_004579857.1 | other | upstream | 4092512 | 2343661 ~ 2347385 (+) | True | LOC117599403 |
| XR_004579764.1 | other | upstream | 5020462 | 1414504 ~ 1419435 (+) | False | ponzr2 |
| TU313925 | other | downstream | 624994 | 7066871 ~ 7082441 (+) | True | G264948 |
| TU313944 | other | downstream | 674183 | 7116060 ~ 7118616 (+) | False | ddx55 |
| trnar-ccu_6 | other | downstream | 926603 | 7368480 ~ 7368552 (+) | True | trnar-ccu_6 |
| trnam-cau_30 | other | downstream | 926685 | 7368562 ~ 7368633 (+) | True | trnam-cau_30 |
| trnar-ccu_7 | other | downstream | 927386 | 7369263 ~ 7369335 (+) | True | trnar-ccu_7 |
