RNA id: trnal-aag_10


Basic Information

Item Value
RNA id trnal-aag_10
length 82
RNA type tRNA
GC content 0.65
exon number 1
gene id trnal-aag_10
representative True

Chromosome Information

Item Value
chromosome id NC_047611.1
NCBI id CM018557.1
chromosome length 24879021
location 1099372 ~ 1099453 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GGTAGCGTGGCCGAGCGGTCTAAGGCGCTGGATTAAGGCTCCAGTCTCTTCGGGGgcgtgggttcgaatcccaccgcTGCCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU309780 lncRNA upstream 43462 969913 ~ 1055910 (+) True G261431
TU309761 lncRNA upstream 158183 879677 ~ 941189 (+) True G261415
TU309479 lncRNA upstream 225600 869954 ~ 873772 (+) True G261201
TU309477 lncRNA upstream 243546 855534 ~ 855826 (+) True G261199
TU309471 lncRNA upstream 283536 815387 ~ 815836 (+) True G261193
TU309868 lncRNA downstream 67026 1166479 ~ 1204782 (+) True G261508
TU309871 lncRNA downstream 103547 1203000 ~ 1214496 (+) True G261510
TU309899 lncRNA downstream 142371 1241824 ~ 1248681 (+) True G261534
TU309901 lncRNA downstream 146347 1245800 ~ 1246611 (+) True G261536
TU309909 lncRNA downstream 163854 1263307 ~ 1264140 (+) True G261544
XM_026910334.2 mRNA upstream 5039 1092079 ~ 1094333 (+) True and3
XM_034312866.1 mRNA upstream 233508 796839 ~ 865864 (+) True uvrag
XM_034312867.1 mRNA upstream 305279 781523 ~ 794093 (+) True dgat2
XM_034312870.1 mRNA upstream 324094 763077 ~ 775278 (+) True mogat2
XM_026910342.2 mRNA upstream 355381 730018 ~ 743991 (+) False umodl1
XM_026910335.2 mRNA downstream 2348 1101801 ~ 1111982 (+) False vamp2
XM_026910332.2 mRNA downstream 20077 1119530 ~ 1128252 (+) True pcolcea
XM_034312493.1 mRNA downstream 261257 1360710 ~ 1387400 (+) True fgf11b
XM_026910307.2 mRNA downstream 302096 1401549 ~ 1408834 (+) True cldn7b
XM_026910308.2 mRNA downstream 312533 1411986 ~ 1418862 (+) False ponzr2
trnal-uag_7 other upstream 4440 1094851 ~ 1094932 (+) True trnal-uag_7
TU309447 other upstream 371647 725827 ~ 727725 (+) True G261178
TU309320 other upstream 586599 507497 ~ 512773 (+) False bcl7ba
TU309389 other upstream 613172 482435 ~ 486200 (+) False prdm15
TU309343 other upstream 618661 444767 ~ 480711 (+) True G261104
TU309774 other downstream 2336 1101789 ~ 1112278 (+) True vamp2
TU309863 other downstream 106538 1205991 ~ 1237132 (+) True G261503
XR_004579765.1 other downstream 315051 1414504 ~ 1419489 (+) False ponzr2
XR_004579764.1 other downstream 315051 1414504 ~ 1419435 (+) False ponzr2
XR_004579857.1 other downstream 1244208 2343661 ~ 2347385 (+) True LOC117599403