RNA id: trnar-ccu_9


Basic Information

Item Value
RNA id trnar-ccu_9
length 73
RNA type tRNA
GC content 0.60
exon number 1
gene id trnar-ccu_9
representative True

Chromosome Information

Item Value
chromosome id NC_047611.1
NCBI id CM018557.1
chromosome length 24879021
location 16625973 ~ 16626045 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GCCccagtggcctaatggataaggCACTGGCCTCCTAAGCCAGGgattgtgggttcgagtcccatctggggtg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU320506 lncRNA upstream 48733 16576363 ~ 16577240 (+) True G270536
TU320489 lncRNA upstream 115226 16510543 ~ 16510747 (+) True G270525
TU320479 lncRNA upstream 240041 16385030 ~ 16385932 (+) True G270520
TU320453 lncRNA upstream 274514 16351248 ~ 16351459 (+) True G270495
TU320399 lncRNA upstream 297201 16328511 ~ 16328772 (+) True G270449
TU320717 lncRNA downstream 171800 16797845 ~ 16798435 (+) True G270716
TU320859 lncRNA downstream 434936 17060981 ~ 17078555 (+) True G270833
TU320884 lncRNA downstream 461350 17087395 ~ 17087922 (+) True G270856
TU320889 lncRNA downstream 473096 17099141 ~ 17101046 (+) False si:ch73-234b20.5
TU320899 lncRNA downstream 501972 17128017 ~ 17138981 (+) True G270870
XM_026942067.2 mRNA upstream 31576 16591893 ~ 16594397 (+) True LOC113543669
XM_026941609.2 mRNA upstream 35979 16583036 ~ 16589994 (+) True reep5
XM_026941568.2 mRNA upstream 73455 16538769 ~ 16552518 (+) True zgc:114200
XM_026941909.2 mRNA upstream 91030 16518234 ~ 16534943 (+) True tpm2
XM_026941747.2 mRNA downstream 44272 16670317 ~ 16744667 (+) False pam
XM_026941750.2 mRNA downstream 44272 16670317 ~ 16744667 (+) False pam
XM_034312523.1 mRNA downstream 44284 16670329 ~ 16744667 (+) True pam
XM_026941748.2 mRNA downstream 48423 16674468 ~ 16744667 (+) False pam
XM_034312484.1 mRNA downstream 122875 16748920 ~ 16787635 (+) False ppip5k2
trnam-cau_36 other upstream 420 16625482 ~ 16625553 (+) True trnam-cau_36
trnar-ccu_8 other upstream 501 16625400 ~ 16625472 (+) True trnar-ccu_8
trnam-cau_35 other upstream 993 16624909 ~ 16624980 (+) True trnam-cau_35
XR_004579771.1 other upstream 1854900 14762313 ~ 14771073 (+) False vps36
XR_004579830.1 other upstream 3309757 13315938 ~ 13316216 (+) True LOC113543571
trnam-cau_37 other downstream 10 16626055 ~ 16626126 (+) True trnam-cau_37
trnam-cau_38 other downstream 759 16626804 ~ 16626875 (+) True trnam-cau_38
trnar-ccu_10 other downstream 2697 16628742 ~ 16628814 (+) True trnar-ccu_10
trnam-cau_39 other downstream 2779 16628824 ~ 16628895 (+) True trnam-cau_39
trnar-ccu_11 other downstream 461623 17087668 ~ 17087740 (+) True trnar-ccu_11