RNA id: trnas-uga_9


Basic Information

Item Value
RNA id trnas-uga_9
length 82
RNA type tRNA
GC content 0.61
exon number 1
gene id trnas-uga_9
representative True

Chromosome Information

Item Value
chromosome id NC_047611.1
NCBI id CM018557.1
chromosome length 24879021
location 18936889 ~ 18936970 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GCTGTGATGGCCGAGTGGTTAAGGCGTTGGACTTGAAATCCAATGGGGTCTCCCCGCGCAGGTTCGAACCCTGCTCGCAGCG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU321770 lncRNA upstream 2749 18933911 ~ 18934140 (+) True G271554
TU321768 lncRNA upstream 5834 18929522 ~ 18931055 (+) True G271552
TU321766 lncRNA upstream 12818 18923815 ~ 18924071 (+) True G271550
TU321764 lncRNA upstream 13306 18923364 ~ 18923583 (+) True G271548
TU321761 lncRNA upstream 17422 18918594 ~ 18919467 (+) True G271545
TU321771 lncRNA downstream 573 18937543 ~ 18940887 (+) True G271555
TU321773 lncRNA downstream 5787 18942757 ~ 18943019 (+) True G271557
TU321754 lncRNA downstream 21198 18958168 ~ 18960267 (+) True G271540
TU321784 lncRNA downstream 23558 18960528 ~ 18960767 (+) True G271568
TU321785 lncRNA downstream 24332 18961302 ~ 18961555 (+) True G271569
XM_026942472.2 mRNA upstream 30700 18900339 ~ 18906189 (+) True plpp5
XM_026942458.2 mRNA downstream 11928 18948898 ~ 18958044 (+) True trim69
XM_034312680.1 mRNA downstream 46163 18983133 ~ 19010793 (+) True aak1b
XM_034312681.1 mRNA downstream 46163 18983133 ~ 19010793 (+) False aak1b
XM_034312682.1 mRNA downstream 46163 18983133 ~ 19002146 (+) False aak1b
XM_034312828.1 mRNA downstream 131236 19068206 ~ 19073060 (+) True LOC117599383
trnas-uga_8 other upstream 901 18935907 ~ 18935988 (+) True trnas-uga_8
trnas-uga_7 other upstream 1211 18935597 ~ 18935678 (+) True trnas-uga_7
trnas-uga_6 other upstream 1676 18935132 ~ 18935213 (+) True trnas-uga_6
trnas-cga_2 other upstream 1924 18934884 ~ 18934965 (+) True trnas-cga_2
trnam-cau_45 other upstream 473697 18463121 ~ 18463192 (+) True trnam-cau_45
TU322151 other downstream 304739 19241709 ~ 19243905 (+) True G271863
XR_004579823.1 other downstream 439127 19376097 ~ 19409418 (+) False LOC113544086
TU322206 other downstream 462628 19399598 ~ 19404927 (+) False LOC113544086
TU322526 other downstream 845457 19782427 ~ 19786819 (+) False LOC113543969
TU322527 other downstream 845457 19782427 ~ 19786819 (+) True LOC113543969

Expression Profile