RNA id: TU354855


Basic Information

Item Value
RNA id TU354855
length 831
lncRNA type inter_gene
GC content 0.49
exon number 1
gene id G299473
representative True

Chromosome Information

Item Value
chromosome id NC_047614.1
NCBI id CM018560.1
chromosome length 21552800
location 120513 ~ 121343 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CGCCTCCTCTAGGGGTACTTGCCAGTATCCTTTGCAAAGGTCCAAGGTAGTGATGTACTTAGCTTGGCCAATCCTCTCTAAAAGGTCATCAATACGTGGCATCGGGTATGCGTCGAATCGTGACTGAGCATTCAGCTTTCTGAAGTCAATGCAGATACGCAGCGTCTCATCTCTCTTTGGGACTATCACGATTGGGCTACTCCATTCACTGTCAGAGGGTTCTATAACTCCCAACTCCAGCATTGTCTCAATCTCCGCTTTTAGAGGCACCAGCAGTCTCTCAGGGATTCTATACGGCCGCTGTCGATGAGGTGTTGCATCAAGGAGCCGGATTCTGTGATGTACCAGGTTAGTCCGCCCAGGCCTCTGACGGAACAACATGGGGTACTGATTTAGGAGATCTTGCAGCTCAGCCCGTTTGAATTCTTCCAAGTGATGCAGATTGACACTTGATGGCTGTGTTGGCCCTTTTGGTTGTGATTCGAGGTtgtcctcatcttcatcctcattgACTTTACGGATCATCAGTGATGTCTTTGGTTTGCTGGGTGGCTCTTTCCACTCTTTGAGCAGATTAATGTGGTAGATTTGTGATGCCTTGCCTTTGTCTGGATGATGAATTTCATAGGTAACTGGCCCAGTCTTGCGAACAACACTGTAGGGTCCCTGCCACTTCATTAACAGCTTGTTCGTTGATGTTGGGAGCAGTAATAATACCTTCTGTCCGGGTTGCAGTTCTCGGGATCGGGCGTGTTGGTCATACCAGGTCTTTTGTGCCTTTTGTGCCTGCCGAAGATTCTCTTGGGCCATCTCCCGGTACCTCTCGAGGCG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU354852 lncRNA upstream 8572 111016 ~ 111941 (+) True G299470
TU354850 lncRNA upstream 11434 108823 ~ 109079 (+) True G299468
TU354879 lncRNA downstream 15541 136884 ~ 147557 (+) True G299492
TU354887 lncRNA downstream 19079 140422 ~ 150637 (+) True G299494
TU354902 lncRNA downstream 52410 173753 ~ 178665 (+) True G299503
TU354873 lncRNA downstream 82469 203812 ~ 204912 (+) True G299486
TU354869 lncRNA downstream 88651 209994 ~ 217409 (+) True G299482
XM_034314456.1 mRNA downstream 44273 165616 ~ 189317 (+) True LOC113525237
XM_034314457.1 mRNA downstream 44273 165616 ~ 189317 (+) False LOC113525237
XM_034314458.1 mRNA downstream 44274 165617 ~ 189317 (+) False LOC113525237
XM_034314459.1 mRNA downstream 47010 168353 ~ 189317 (+) False LOC113525237
XM_034314309.1 mRNA downstream 104921 226264 ~ 241666 (+) False LOC113525392
XR_004580270.1 other downstream 44272 165615 ~ 188775 (+) False LOC113525237
TU354973 other downstream 235419 356762 ~ 360258 (+) True dram2b
TU354975 other downstream 235419 356762 ~ 360258 (+) False dram2b
TU354977 other downstream 235419 356762 ~ 360258 (+) False dram2b
TU354978 other downstream 235419 356762 ~ 360258 (+) False dram2b

Expression Profile