RNA id: TU354873


Basic Information

Item Value
RNA id TU354873
length 1041
lncRNA type inter_gene
GC content 0.45
exon number 2
gene id G299486
representative True

Chromosome Information

Item Value
chromosome id NC_047614.1
NCBI id CM018560.1
chromosome length 21552800
location 203812 ~ 204912 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

tctgacaaaaaaattacatgacaGTAGACATAAAGTAGACATGACAAAGACGTGATAAAATTGATGAGGATTAAGGGAATGACAGCAGAATTAGGACAGTCCCCAGACTACAGCAGTCTTATGGCCAATGTCCACTTTAAATAGTGCATAATGGTGAAAAGGAAAGAGTGTGTATTTAGCCAATCAGACAAGAAGGTCACTAATAAAATAGCTTTAATTTGCTATAAGCATAAGACAGTGAGACTACAGACACGCCCACCAACAGCAAAAGTAGATACATACATTTAGTGTCTAACTGacctcatttacataaaatatctgtttaataaacaaatatgccaaatctataaacacaaacacacaactctaTAACCAcaaacatgcaacaaatttataaacacaaacactcgaTGCTACAAAAAACTAAAAGCagtaatatttcaaataaactaaataaatgtatataaatgtacaaGAAAAActtggctgtgtgtttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagagagagagagagagagagagagactgagtcCAGAGTAAAAGCTTactcaggctgtgtgtgtgtttgtgtgtgtttttgggagtCACTGCGCATGCAAGGGGTGGGGCAGGTGGGTGGGGCCAGCAGATGGGAGGGGCCAGGCCTCGTTGCCCTGGTGATTCTGCAGCAGGCGGTACAGCTGTTTGAGCTGTGTGACAATGTTGTCCTTTATGTCCGGGACAGAAATCTGGAGACGCACACTGGAGCTGTCAAAGGAACGAGTTCCATCTGAACTGAACATCTCAGTGATGATCCTCGCCACCACAGGGactacctacacacacacacaggcatgcgcgcacacacacacacacaggcatgcgcgcacacacacacacacaggcacgcgcgcacacacacacaggcacgcgcgcacacacacacaggcatgcgcgcacacacacacaggcatgcacacacacaggcatgcacacacacaggcatgcacacacacaca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU354902 lncRNA upstream 25147 173753 ~ 178665 (+) True G299503
TU354887 lncRNA upstream 53175 140422 ~ 150637 (+) True G299494
TU354879 lncRNA upstream 56255 136884 ~ 147557 (+) True G299492
TU354855 lncRNA upstream 82469 120513 ~ 121343 (+) True G299473
TU354852 lncRNA upstream 91871 111016 ~ 111941 (+) True G299470
TU354869 lncRNA downstream 5082 209994 ~ 217409 (+) True G299482
TU354922 lncRNA downstream 31164 236076 ~ 236490 (+) True G299522
TU354931 lncRNA downstream 46811 251723 ~ 254232 (+) True G299528
TU354966 lncRNA downstream 146748 351660 ~ 354432 (+) False dram2b
TU354974 lncRNA downstream 151850 356762 ~ 360258 (+) False dram2b
XM_034314456.1 mRNA upstream 14495 165616 ~ 189317 (+) True LOC113525237
XM_034314309.1 mRNA downstream 21352 226264 ~ 241666 (+) False LOC113525392
XM_034314308.1 mRNA downstream 21353 226265 ~ 241666 (+) False LOC113525392
XM_034314313.1 mRNA downstream 21354 226266 ~ 241666 (+) False LOC113525392
XM_034314311.1 mRNA downstream 21356 226268 ~ 241666 (+) False LOC113525392
XM_034314310.1 mRNA downstream 21614 226526 ~ 241666 (+) True LOC113525392
XR_004580270.1 other upstream 15037 165615 ~ 188775 (+) False LOC113525237
TU354973 other downstream 151850 356762 ~ 360258 (+) True dram2b
TU354975 other downstream 151850 356762 ~ 360258 (+) False dram2b
TU354977 other downstream 151850 356762 ~ 360258 (+) False dram2b
TU354978 other downstream 151850 356762 ~ 360258 (+) False dram2b
TU354979 other downstream 151850 356762 ~ 360258 (+) False dram2b

Expression Profile