RNA id: TU354879


Basic Information

Item Value
RNA id TU354879
length 1032
lncRNA type inter_gene
GC content 0.47
exon number 2
gene id G299492
representative True

Chromosome Information

Item Value
chromosome id NC_047614.1
NCBI id CM018560.1
chromosome length 21552800
location 136884 ~ 147557 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

accaatacacacacatggtagTATAATAACGTAATAATAGAGTGAGTGACTCACTTTCCCAGTGTATAGCCAATGAATTTACTCCTGCTGCATTCCAAAAAGTTCTCAATGTCTTTCtccctgttacacacacacacacacacacacacacacacacagtaaatatgaGAGTCTGTAACCGTGTTCatacctggcattaacatgcgtCCTGGGTGATCGGATCACACGTGTACAGTTGAGACGTACAgccgttcacacctggcattacgAACGCGTCTCCAGTGAGCACCTGTGATCGGATTTCATACACCGTTTCCGCTGGAGAAAAGCTTTCACGCACATTTATTATATCAGTCTtctgctgcatttgttttcCGGCAGAAATGTCCTCTCATGTACATTTACAGgctgtttaaaaaattttatcgCATGGTCTGCTAATGaaacttataaatgaatgagagataAGATGACGAATGAAGCTATAAAAAGCAGATGCTTTTGTCTCTGCTGTTACAGCGTCGTctttatccattagcctagCGGCAGAGAGCTCTACCCTCAGCatgatttccaaacagtctcgCAGTGATTGCGTATTTTCCAGCTAGGGGAGTCGATCAGGTGCTCCTTCCTTGCTGTCCAGACGCACTGGCATTCACACTACAgatgtgatgtggtcatatgCCTTCCAGACCACCTCCAAATGTGGTTTTAGTGATCGGATCACAACGTGTCTCCGAGATGCATTTGACCCGTTTACACCTGTACTAAgcgctgtccacttgtgatcccATCACCCAGGacgcatgttaatgccaggtttGAACGgggcgtgtgtctgtgtgggcgTGTCACAGGCTGCTAAACATGTCTGTGTACCGGACTTTTGGAGCCCACGGAAGCCCTTTAGGGAAGGACACTCTGTCAGAGGAGGGGTGAGGAATAGGCATGGGCCATGACCTCATCTCGCCCAGAGGAAAAGGTTCTGCCTCTAGAGAATTCTCATTATCAtcactctcctcctcttcc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU354855 lncRNA upstream 15541 120513 ~ 121343 (+) True G299473
TU354852 lncRNA upstream 24943 111016 ~ 111941 (+) True G299470
TU354850 lncRNA upstream 27805 108823 ~ 109079 (+) True G299468
TU354902 lncRNA downstream 26196 173753 ~ 178665 (+) True G299503
TU354873 lncRNA downstream 56255 203812 ~ 204912 (+) True G299486
TU354869 lncRNA downstream 62437 209994 ~ 217409 (+) True G299482
TU354922 lncRNA downstream 88519 236076 ~ 236490 (+) True G299522
TU354931 lncRNA downstream 104166 251723 ~ 254232 (+) True G299528
XM_034314456.1 mRNA downstream 18059 165616 ~ 189317 (+) True LOC113525237
XM_034314457.1 mRNA downstream 18059 165616 ~ 189317 (+) False LOC113525237
XM_034314458.1 mRNA downstream 18060 165617 ~ 189317 (+) False LOC113525237
XM_034314459.1 mRNA downstream 20796 168353 ~ 189317 (+) False LOC113525237
XM_034314309.1 mRNA downstream 78707 226264 ~ 241666 (+) False LOC113525392
XR_004580270.1 other downstream 18058 165615 ~ 188775 (+) False LOC113525237
TU354973 other downstream 209205 356762 ~ 360258 (+) True dram2b
TU354975 other downstream 209205 356762 ~ 360258 (+) False dram2b
TU354977 other downstream 209205 356762 ~ 360258 (+) False dram2b
TU354978 other downstream 209205 356762 ~ 360258 (+) False dram2b

Expression Profile