RNA id: TU354931


Basic Information

Item Value
RNA id TU354931
length 375
lncRNA type inter_gene
GC content 0.42
exon number 2
gene id G299528
representative True

Chromosome Information

Item Value
chromosome id NC_047614.1
NCBI id CM018560.1
chromosome length 21552800
location 251723 ~ 254232 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CTTAGTGTACTGCATTTAACGCACTCGTACGTAGTGTACTGCATTTAACGCACTCGTACgtagtgtactgtatttaacgcACTCGTACGTAGTGTACTGCATTTAACGCACTCGTACTTAGTGTACTGCATTTAACGCACTCGTACttagtgtactgtatttaacgcACTCGTACGtagtgtactgtatttaacgcACTCGTACGTAGTGTACTGCATTTAACGCACTCGTACttagtgtactgtatttaacgcACTCGTACTTAGTGTACTGCATTTAACGCACTCGTACTTAGTGTACTGCATTTAACGCACTCGTACTTAGTGTACTGCATTTAACGCACTCGTACGTAGTGTACTGCATTTAACGCACTCG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU354922 lncRNA upstream 15233 236076 ~ 236490 (+) True G299522
TU354869 lncRNA upstream 34314 209994 ~ 217409 (+) True G299482
TU354873 lncRNA upstream 46811 203812 ~ 204912 (+) True G299486
TU354902 lncRNA upstream 73058 173753 ~ 178665 (+) True G299503
TU354887 lncRNA upstream 101086 140422 ~ 150637 (+) True G299494
TU354966 lncRNA downstream 97428 351660 ~ 354432 (+) False dram2b
TU354974 lncRNA downstream 102530 356762 ~ 360258 (+) False dram2b
TU355032 lncRNA downstream 264185 518417 ~ 520943 (+) False cdkn1a
TU355052 lncRNA downstream 311044 565276 ~ 565508 (+) True G299618
TU355059 lncRNA downstream 347326 601558 ~ 602113 (+) True G299625
XM_034314309.1 mRNA upstream 10057 226264 ~ 241666 (+) False LOC113525392
XM_034314308.1 mRNA upstream 10057 226265 ~ 241666 (+) False LOC113525392
XM_034314313.1 mRNA upstream 10057 226266 ~ 241666 (+) False LOC113525392
XM_034314311.1 mRNA upstream 10057 226268 ~ 241666 (+) False LOC113525392
XM_034314310.1 mRNA upstream 10057 226526 ~ 241666 (+) True LOC113525392
XM_034314382.1 mRNA downstream 28635 282867 ~ 295160 (+) False pparda
XM_034314383.1 mRNA downstream 30114 284346 ~ 295160 (+) True pparda
XM_034314355.1 mRNA downstream 61736 315968 ~ 326307 (+) True wdr77
XM_034314353.1 mRNA downstream 61737 315969 ~ 326307 (+) False wdr77
XM_034314472.1 mRNA downstream 97356 351588 ~ 358366 (+) False dram2b
XR_004580270.1 other upstream 62948 165615 ~ 188775 (+) False LOC113525237
TU354973 other downstream 102530 356762 ~ 360258 (+) True dram2b
TU354975 other downstream 102530 356762 ~ 360258 (+) False dram2b
TU354977 other downstream 102530 356762 ~ 360258 (+) False dram2b
TU354978 other downstream 102530 356762 ~ 360258 (+) False dram2b
TU354979 other downstream 102530 356762 ~ 360258 (+) False dram2b

Expression Profile