RNA id: TU354966


Basic Information

Item Value
RNA id TU354966
length 525
lncRNA type sense_over
GC content 0.48
exon number 4
gene id dram2b
representative False

Chromosome Information

Item Value
chromosome id NC_047614.1
NCBI id CM018560.1
chromosome length 21552800
location 351588 ~ 360258 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ACAGGAAGTGGCTTGAGGAGGTGGATAAAGTAAACATAAAGTAAAAATGCAGGAATAAAACtaatcggtgtgtgtgtgtgtatcagagagagagattatctACAGGAATGATTAACGACACGGACACATAACAGACAGACCGGAAGTTGCGTCATGAGGTGACAGGAGTAATTTAAAAGCAGGACCtcagatacagacacacacacacacacacacacacacacacacacacacaggagcctGGCTGTGGACTCTGCGCACGGGGACGGCGTCTCACACACGGATTAAAGggtggtGGAGATGTGGTGGTTCCAGGAGGGGTTGTGTTTCCTGCCAGTGTTGCTGGTGGTTTGGACAGCAGCTACATTTGTTTTCGCTTACATCACAGCCGTGGTGCTGAGACACGTCGACCCGTTCGTCCCCTACATCAGtgatACGGGAACAGTTCCTCctgagaggtgtgtgtttgggatcatGCTCAGTGTCTCAGCTTTTCTGGGTAAAAACCAAAAACTTCTTGTTTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU354931 lncRNA upstream 97428 251723 ~ 254232 (+) True G299528
TU354922 lncRNA upstream 115170 236076 ~ 236490 (+) True G299522
TU354869 lncRNA upstream 134251 209994 ~ 217409 (+) True G299482
TU354873 lncRNA upstream 146748 203812 ~ 204912 (+) True G299486
TU354902 lncRNA upstream 172995 173753 ~ 178665 (+) True G299503
TU354974 lncRNA downstream 2330 356762 ~ 360258 (+) False dram2b
TU355032 lncRNA downstream 163985 518417 ~ 520943 (+) False cdkn1a
TU355052 lncRNA downstream 210844 565276 ~ 565508 (+) True G299618
TU355059 lncRNA downstream 247126 601558 ~ 602113 (+) True G299625
TU355092 lncRNA downstream 324517 678949 ~ 683096 (+) False LOC117599902
XM_034314355.1 mRNA upstream 25353 315968 ~ 326307 (+) True wdr77
XM_034314353.1 mRNA upstream 25353 315969 ~ 326307 (+) False wdr77
XM_034314382.1 mRNA upstream 56500 282867 ~ 295160 (+) False pparda
XM_034314383.1 mRNA upstream 56500 284346 ~ 295160 (+) True pparda
XM_034314308.1 mRNA upstream 109994 226265 ~ 241666 (+) False LOC113525392
XM_034314151.1 mRNA downstream 22130 376562 ~ 380543 (+) False zgc:153675
XM_034314150.1 mRNA downstream 22133 376565 ~ 380541 (+) True zgc:153675
XM_026912036.2 mRNA downstream 51676 406108 ~ 409450 (+) True btg2
XM_034313965.1 mRNA downstream 77080 431512 ~ 439177 (+) True arl8a
XM_026935274.2 mRNA downstream 137613 492045 ~ 495637 (+) True apobec2a
XR_004580270.1 other upstream 162885 165615 ~ 188775 (+) False LOC113525237
TU354973 other downstream 2330 356762 ~ 360258 (+) True dram2b
TU354975 other downstream 2330 356762 ~ 360258 (+) False dram2b
TU354977 other downstream 2330 356762 ~ 360258 (+) False dram2b
TU354978 other downstream 2330 356762 ~ 360258 (+) False dram2b
TU354979 other downstream 2330 356762 ~ 360258 (+) False dram2b

Expression Profile