RNA id: TU354977


Basic Information

Item Value
RNA id TU354977
length 2215
RNA type TUCP
GC content 0.38
exon number 4
gene id dram2b
representative False

Chromosome Information

Item Value
chromosome id NC_047614.1
NCBI id CM018560.1
chromosome length 21552800
location 351588 ~ 360258 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

tgtgtgtgtgtgtcagggctGTAAAAAGATGACACATTGTGATTATATTTCTACACACCACAGTTCATCACCCAGAAAAACTCGATTAGAACACTGCTCTGTGTTTAgaggctcatttgcatatcatttGCATACTGTGGGTTCCAATATGCAAACGTGTGATTATATTTATACGCTGTATTgtgtatactgtagtatattatacactgtgtgtgtgtgtgtgtgtgtgtttcagggttaCACGGCTCACATGGTCAGCACGGTCTCTGAATGGTCTCTGGCTTTTTCCTTCATCAGCTTCTTCCTCACCTACATCAGAGACTTTCagAAAATCAACCTGAGGGCGGAGGCGGACCTTCAGAGCAGTAATTTGCATGACTCCTCCCATTTTGGTTCGACGTGGATCCCTGGAGAGACATCCCCCTTACTGGCTGGatccatttaaacacacacacacacacatacacacacacacacacacacagaccaccaCAAcccctaatacacacacacacgtatacacacacacagagaccaccacaacccctaacacacacacacacacacacacacacacacacagaccaccacaacccctaacacacacacacacacacagaccaccaCAAcccctaatacacacacacacacgtatacacacacacacacaccaccacaacccctaatacacacacacacacacacccctttctaaaaaattttataactgtttataactgacCAATAGGAGCAAAGATCTGTTTAGATAACAGCAGTTTCTCAGGATCAACATGTAGAGCTGTGGTTCTGTCCTCATGGTTCTGTCCTTGTGGTCCTGGTTCTGTCCTCATGGTTCTGTCCTCATGGTTCTGTCCTTGTCCTCATGGTTCTGTCCTCATGGTTCTGTCCTCATGGTTCTGTCCTCATGGTTCTGTCTCTGCCCCGTGGCTCGTCTCATTAAGGcagctgtttttaaaaactataaaatcaCTAAAAATCGCACGActgtcatttaaacatttttcttttaaatctggGAAACCTGTACAGTGCTGAATTTTCTTAAATTCCATGAACCTGAAACTGAATCAGTGTTTAAATCACGTCGTCTTTAACTGCAGCAGGGTTTTAAATATTAACtccaggaaaaaacaaacaaacgtaGGTTTCAGCTTTTATACAGAACGcacttttagattttattttaaacacagatatAAATGCAGTTTAAACTTTTCCTCGACACACAGAGTGATGTGTTTATATCTGATTTAACcgtctgtatttttattaaatctaaCATTTAACTCTGTAATGATATTAACCACAGCATGGTACTGCAGCCTgcactccgtgtgtgtgtgtgtgtgtgtgtattatattagTGCTGTTCATCATTTACTGTTATTTGTTAGTTTGCACTCATTATTAGCCGAGTTAGCGTTAGCTTTTCTCTGAcaaagtgtgaatgtgtaaaaaaatcctgatgttaattaattaaccacgtttgtgtttaaaagcagtgtttgtgtaattttatataaGTGTTTAGATTTAATCATGATCTAGTTAGCACAAATCCTCAAACAGTtaacttttaattattattttattgttttctgttatttgCTCTAGTCCTAGCTTAACATTCACTTATTAGCCACATTAGTGTTTCACTGCTGATCAATTTGAGCTTTTTAATTATAGCCTTATTATTAGCCACGTTAGCATTTATCAGTTTGgcacagattttattttgaacGAGAAACAGCAATAATCAGTAAGAAATACGCTACTGTACATCATCTACAGAAATATCATCTGTACGCTAGCTGACGTCTCTTAGTTAAGTTAGCATGTCTGTTAGCATTAGTTAGcatttataaagatttttaGACTCCTAGTGTAAGAAAcgtatgtttatatatttgtgttgaAGAGCCAATTAGatgttttgttcatgttgtttATTATAACTAGCCTGCTAATGAACTAGCCTGCTAATGAACTAGCCTGCTAATGAACTAGCCTTCTAATGAACTGATGTGGATCATGTCACTGACACgctgatttattttacatcagattttatttttaatgaacacaaaGTGCATGAACAAGCagctgtgaaacacacacacacacacacacaaaacctaaaatgttcaacacacactcagagtcaGTATTGATGTATTTGAAACTGTAAGACAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU354966 lncRNA upstream 2330 351660 ~ 354432 (+) False dram2b
TU354931 lncRNA upstream 102530 251723 ~ 254232 (+) True G299528
TU354922 lncRNA upstream 120272 236076 ~ 236490 (+) True G299522
TU354869 lncRNA upstream 139353 209994 ~ 217409 (+) True G299482
TU354873 lncRNA upstream 151850 203812 ~ 204912 (+) True G299486
TU355032 lncRNA downstream 158159 518417 ~ 520943 (+) False cdkn1a
TU355052 lncRNA downstream 205018 565276 ~ 565508 (+) True G299618
TU355059 lncRNA downstream 241300 601558 ~ 602113 (+) True G299625
TU355092 lncRNA downstream 318691 678949 ~ 683096 (+) False LOC117599902
TU355093 lncRNA downstream 318691 678949 ~ 726922 (+) False LOC117599902
XM_034314355.1 mRNA upstream 30455 315968 ~ 326307 (+) True wdr77
XM_034314353.1 mRNA upstream 30455 315969 ~ 326307 (+) False wdr77
XM_034314382.1 mRNA upstream 61602 282867 ~ 295160 (+) False pparda
XM_034314383.1 mRNA upstream 61602 284346 ~ 295160 (+) True pparda
XM_034314312.1 mRNA upstream 115096 226526 ~ 241666 (+) False LOC113525392
XM_034314151.1 mRNA downstream 16304 376562 ~ 380543 (+) False zgc:153675
XM_034314150.1 mRNA downstream 16307 376565 ~ 380541 (+) True zgc:153675
XM_026912036.2 mRNA downstream 45850 406108 ~ 409450 (+) True btg2
XM_034313965.1 mRNA downstream 71254 431512 ~ 439177 (+) True arl8a
XM_026935274.2 mRNA downstream 131787 492045 ~ 495637 (+) True apobec2a
XR_004580270.1 other upstream 167987 165615 ~ 188775 (+) False LOC113525237
XR_004580271.1 other downstream 158309 518567 ~ 520887 (+) False cdkn1a
TU355161 other downstream 482722 842980 ~ 844811 (+) False LOC113539702
TU355179 other downstream 503080 863338 ~ 864888 (+) False fbxo42
TU355411 other downstream 1136602 1496860 ~ 1498487 (+) False LOC117599925
TU355413 other downstream 1136602 1496860 ~ 1497627 (+) False LOC117599925

Expression Profile