Gene
RNA
| Item | Value |
|---|---|
| RNA id | XM_026935275.2 |
| length | 1016 |
| RNA type | mRNA |
| GC content | 0.49 |
| exon number | 3 |
| gene id | cdkn1a |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_047614.1 |
| NCBI id | CM018560.1 |
| chromosome length | 21552800 |
| location | 515540 ~ 520943 (+) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| id | name | namespace |
|---|---|---|
| GO:0010165 | response to X-ray | biological_process |
| GO:0035914 | skeletal muscle cell differentiation | biological_process |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU354974 | lncRNA | upstream | 158309 | 356762 ~ 360258 (+) | False | dram2b |
| TU354966 | lncRNA | upstream | 164135 | 351660 ~ 354432 (+) | False | dram2b |
| TU354931 | lncRNA | upstream | 264335 | 251723 ~ 254232 (+) | True | G299528 |
| TU354922 | lncRNA | upstream | 282077 | 236076 ~ 236490 (+) | True | G299522 |
| TU354869 | lncRNA | upstream | 301158 | 209994 ~ 217409 (+) | True | G299482 |
| TU355052 | lncRNA | downstream | 44763 | 565276 ~ 565508 (+) | True | G299618 |
| TU355059 | lncRNA | downstream | 81045 | 601558 ~ 602113 (+) | True | G299625 |
| TU355092 | lncRNA | downstream | 158436 | 678949 ~ 683096 (+) | False | LOC117599902 |
| TU355093 | lncRNA | downstream | 158436 | 678949 ~ 726922 (+) | False | LOC117599902 |
| TU355094 | lncRNA | downstream | 158436 | 678949 ~ 726922 (+) | False | LOC117599902 |
| XM_026935277.2 | mRNA | upstream | 10214 | 503469 ~ 508353 (+) | True | srsf3b |
| XM_026935274.2 | mRNA | upstream | 22930 | 492045 ~ 495637 (+) | True | apobec2a |
| XM_034313965.1 | mRNA | upstream | 79390 | 431512 ~ 439177 (+) | True | arl8a |
| XM_026912036.2 | mRNA | upstream | 109117 | 406108 ~ 409450 (+) | True | btg2 |
| XM_034314150.1 | mRNA | upstream | 138026 | 376565 ~ 380541 (+) | True | zgc:153675 |
| XM_034314462.1 | mRNA | downstream | 1863 | 522376 ~ 530478 (+) | True | tmcc2 |
| XM_034314463.1 | mRNA | downstream | 1865 | 522378 ~ 530478 (+) | False | tmcc2 |
| XM_026935566.2 | mRNA | downstream | 21524 | 542037 ~ 547617 (+) | True | bysl |
| XM_026935567.2 | mRNA | downstream | 21524 | 542037 ~ 547617 (+) | False | bysl |
| XM_026935655.2 | mRNA | downstream | 28320 | 548833 ~ 554712 (+) | True | ccnd3 |
| TU354973 | other | upstream | 158309 | 356762 ~ 360258 (+) | True | dram2b |
| TU355161 | other | downstream | 322467 | 842980 ~ 844811 (+) | False | LOC113539702 |
| TU355179 | other | downstream | 342825 | 863338 ~ 864888 (+) | False | fbxo42 |
| TU355411 | other | downstream | 976347 | 1496860 ~ 1498487 (+) | False | LOC117599925 |
| TU355413 | other | downstream | 976347 | 1496860 ~ 1497627 (+) | False | LOC117599925 |
| TU358141 | other | downstream | 3946564 | 4467077 ~ 4469174 (+) | False | LOC113539599 |
