RNA id: TU355052


Basic Information

Item Value
RNA id TU355052
length 213
lncRNA type inter_gene
GC content 0.42
exon number 2
gene id G299618
representative True

Chromosome Information

Item Value
chromosome id NC_047614.1
NCBI id CM018560.1
chromosome length 21552800
location 565276 ~ 565508 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CCGACAGTTAAGATTATTAGGAAGAAGAAGTGATGGTCACAAACAAAACTACACACAGGAGCCTCGtaatacacaataacacacacactgtgtggaGGAAACTGTtaccactgctgtgtgtgtgtgtgtgtgtgtgtgttagtcgtCCTGCTGAATTTGAAATGTCTAGCAGTAGTGAGTCAAGGTGACTGGACTTGTTATGATGATGAAAAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU355032 lncRNA upstream 44333 518417 ~ 520943 (+) False cdkn1a
TU354974 lncRNA upstream 205018 356762 ~ 360258 (+) False dram2b
TU354966 lncRNA upstream 210844 351660 ~ 354432 (+) False dram2b
TU354931 lncRNA upstream 311044 251723 ~ 254232 (+) True G299528
TU354922 lncRNA upstream 328786 236076 ~ 236490 (+) True G299522
TU355059 lncRNA downstream 36050 601558 ~ 602113 (+) True G299625
TU355092 lncRNA downstream 113441 678949 ~ 683096 (+) False LOC117599902
TU355093 lncRNA downstream 113441 678949 ~ 726922 (+) False LOC117599902
TU355094 lncRNA downstream 113441 678949 ~ 726922 (+) False LOC117599902
TU355095 lncRNA downstream 113441 678949 ~ 726922 (+) True LOC117599902
XM_026935655.2 mRNA upstream 10564 548833 ~ 554712 (+) True ccnd3
XM_034314243.1 mRNA upstream 10564 549064 ~ 554712 (+) False ccnd3
XM_026935566.2 mRNA upstream 17659 542037 ~ 547617 (+) True bysl
XM_026935567.2 mRNA upstream 17659 542037 ~ 547617 (+) False bysl
XM_034314462.1 mRNA upstream 34798 522376 ~ 530478 (+) True tmcc2
XM_034314229.1 mRNA downstream 6080 571588 ~ 607621 (+) True dstyk
XM_034314272.1 mRNA downstream 113409 678917 ~ 683097 (+) False LOC117599902
XM_034314258.1 mRNA downstream 122443 687951 ~ 696115 (+) True nbl1
XM_034314263.1 mRNA downstream 133518 699026 ~ 703360 (+) True LOC113539512
XM_034314264.1 mRNA downstream 133518 699026 ~ 703360 (+) False LOC113539512
XR_004580271.1 other upstream 44389 518567 ~ 520887 (+) False cdkn1a
TU354973 other upstream 205018 356762 ~ 360258 (+) True dram2b
TU355161 other downstream 277472 842980 ~ 844811 (+) False LOC113539702
TU355179 other downstream 297830 863338 ~ 864888 (+) False fbxo42
TU355411 other downstream 931352 1496860 ~ 1498487 (+) False LOC117599925
TU355413 other downstream 931352 1496860 ~ 1497627 (+) False LOC117599925
TU358141 other downstream 3901569 4467077 ~ 4469174 (+) False LOC113539599

Expression Profile