RNA id: TU355059


Basic Information

Item Value
RNA id TU355059
length 366
lncRNA type intronic
GC content 0.38
exon number 2
gene id G299625
representative True

Chromosome Information

Item Value
chromosome id NC_047614.1
NCBI id CM018560.1
chromosome length 21552800
location 601558 ~ 602113 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

acacacacacacacgtatacacacgtataaacacacacacgtatacacacacacacacatatacatacacacacacacgtatacacacacatatacatatacatacacacacacacgtatacacacacatatacatacacacacgtatacacacacatatacatacacacacacacgtatacacacacacatatacatacacacacgtatacacacacatatacatatacacacacacacacacgtatacacacacatatacatacacacacacgtatacacacacatatacatatacacacacacacacgtatacacacacacatgtatacatacacacacagaggttatGGTCTGGTCTTTTTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU355052 lncRNA upstream 36050 565276 ~ 565508 (+) True G299618
TU355032 lncRNA upstream 80615 518417 ~ 520943 (+) False cdkn1a
TU354974 lncRNA upstream 241300 356762 ~ 360258 (+) False dram2b
TU354966 lncRNA upstream 247126 351660 ~ 354432 (+) False dram2b
TU354931 lncRNA upstream 347326 251723 ~ 254232 (+) True G299528
TU355092 lncRNA downstream 76836 678949 ~ 683096 (+) False LOC117599902
TU355093 lncRNA downstream 76836 678949 ~ 726922 (+) False LOC117599902
TU355094 lncRNA downstream 76836 678949 ~ 726922 (+) False LOC117599902
TU355095 lncRNA downstream 76836 678949 ~ 726922 (+) True LOC117599902
TU355101 lncRNA downstream 156396 758509 ~ 805095 (+) False mfap2
XM_026935655.2 mRNA upstream 46846 548833 ~ 554712 (+) True ccnd3
XM_034314243.1 mRNA upstream 46846 549064 ~ 554712 (+) False ccnd3
XM_026935566.2 mRNA upstream 53941 542037 ~ 547617 (+) True bysl
XM_026935567.2 mRNA upstream 53941 542037 ~ 547617 (+) False bysl
XM_034314463.1 mRNA upstream 71080 522378 ~ 530478 (+) False tmcc2
XM_034314272.1 mRNA downstream 76804 678917 ~ 683097 (+) False LOC117599902
XM_034314258.1 mRNA downstream 85838 687951 ~ 696115 (+) True nbl1
XM_034314263.1 mRNA downstream 96913 699026 ~ 703360 (+) True LOC113539512
XM_034314264.1 mRNA downstream 96913 699026 ~ 703360 (+) False LOC113539512
XM_034314233.1 mRNA downstream 123427 725540 ~ 740352 (+) True LOC113539444
XR_004580271.1 other upstream 80671 518567 ~ 520887 (+) False cdkn1a
TU354975 other upstream 241300 356762 ~ 360258 (+) False dram2b
TU355161 other downstream 240867 842980 ~ 844811 (+) False LOC113539702
TU355179 other downstream 261225 863338 ~ 864888 (+) False fbxo42
TU355411 other downstream 894747 1496860 ~ 1498487 (+) False LOC117599925
TU355413 other downstream 894747 1496860 ~ 1497627 (+) False LOC117599925
TU358141 other downstream 3864964 4467077 ~ 4469174 (+) False LOC113539599

Expression Profile