RNA id: TU355092


Basic Information

Item Value
RNA id TU355092
length 363
lncRNA type sense_over
GC content 0.55
exon number 4
gene id LOC117599902
representative False

Chromosome Information

Item Value
chromosome id NC_047614.1
NCBI id CM018560.1
chromosome length 21552800
location 678917 ~ 726922 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ACCAGCCTTCAGCTGTAGGTCAGGCAGCTGCAACATGGCGGAGGAGCGCGGCCGGAAGTGGGACCGGTGTCTCGCGGACAGCGCTGTCAAATTAGtaacGGGGCTCAGCGTCGGCGCTCTGTTCTCTGTCCTGCTTTTCAAACgacgtACATGGCCCATAGCGTTCGGAGCAGGAATGGGGATCGGCATGGCGTGTTCTAACTGCCAACACGACTTCAGATCACCGTACCTGCTACACGGACACGTGGTgaaggatcaGTAGATGAATCCTGTCTCCAGTTCTGCTGCGTCTGACTccaggcagtgtgtgtttgtgtgtgtgtgtgtgtgtgacaggatCTTTAATAAAGTTGAAAGAACTCG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU355059 lncRNA upstream 76836 601558 ~ 602113 (+) True G299625
TU355052 lncRNA upstream 113441 565276 ~ 565508 (+) True G299618
TU355032 lncRNA upstream 158006 518417 ~ 520943 (+) False cdkn1a
TU354974 lncRNA upstream 318691 356762 ~ 360258 (+) False dram2b
TU354966 lncRNA upstream 324517 351660 ~ 354432 (+) False dram2b
TU355101 lncRNA downstream 75413 758509 ~ 805095 (+) False mfap2
TU355137 lncRNA downstream 125063 808159 ~ 809350 (+) True G299679
TU355170 lncRNA downstream 155267 838363 ~ 838915 (+) True G299708
TU355157 lncRNA downstream 162372 845468 ~ 847722 (+) True G299695
TU355181 lncRNA downstream 190139 873235 ~ 873473 (+) True G299719
XM_034314229.1 mRNA upstream 71328 571588 ~ 607621 (+) True dstyk
XM_026935655.2 mRNA upstream 124237 548833 ~ 554712 (+) True ccnd3
XM_034314243.1 mRNA upstream 124237 549064 ~ 554712 (+) False ccnd3
XM_026935566.2 mRNA upstream 131332 542037 ~ 547617 (+) True bysl
XM_026935567.2 mRNA upstream 131332 542037 ~ 547617 (+) False bysl
XM_034314258.1 mRNA downstream 4855 687951 ~ 696115 (+) True nbl1
XM_034314263.1 mRNA downstream 15930 699026 ~ 703360 (+) True LOC113539512
XM_034314264.1 mRNA downstream 15930 699026 ~ 703360 (+) False LOC113539512
XM_034314233.1 mRNA downstream 42444 725540 ~ 740352 (+) True LOC113539444
XM_026935674.2 mRNA downstream 65553 748649 ~ 752616 (+) True fndc10
XR_004580271.1 other upstream 158062 518567 ~ 520887 (+) False cdkn1a
TU354975 other upstream 318691 356762 ~ 360258 (+) False dram2b
TU355161 other downstream 159884 842980 ~ 844811 (+) False LOC113539702
TU355179 other downstream 180242 863338 ~ 864888 (+) False fbxo42
TU355411 other downstream 813764 1496860 ~ 1498487 (+) False LOC117599925
TU355413 other downstream 813764 1496860 ~ 1497627 (+) False LOC117599925
TU358141 other downstream 3783981 4467077 ~ 4469174 (+) False LOC113539599

Expression Profile