RNA id: TU355093


Basic Information

Item Value
RNA id TU355093
length 392
lncRNA type read_through
GC content 0.55
exon number 5
gene id LOC117599902
representative False

Chromosome Information

Item Value
chromosome id NC_047614.1
NCBI id CM018560.1
chromosome length 21552800
location 678917 ~ 726922 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ACCAGCCTTCAGCTGTAGGTCAGGCAGCTGCAACATGGCGGAGGAGCGCGGCCGGAAGTGGGACCGGTGTCTCGCGGACAGCGCTGTCAAATTAGtaacGGGGCTCAGCGTCGGCGCTCTGTTCTCTGTCCTGCTTTTCAAACgacgtACATGGCCCATAGCGTTCGGAGCAGGAATGGGGATCGGCATGGCGTGTTCTAACTGCCAACACGACTTCAGATCACCGTACCTGCTACACGGACACGTGGTgaaggatcaGTAGATGAATCCTGTCTCCAGTTCTGCTGCGTCTGACTccaggcagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgactgaatgTGGACTGAATGATTGTCCAGATCAGGGGTGGGAGAAAATGACTATTAAAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU355059 lncRNA upstream 76836 601558 ~ 602113 (+) True G299625
TU355052 lncRNA upstream 113441 565276 ~ 565508 (+) True G299618
TU355032 lncRNA upstream 158006 518417 ~ 520943 (+) False cdkn1a
TU354974 lncRNA upstream 318691 356762 ~ 360258 (+) False dram2b
TU354966 lncRNA upstream 324517 351660 ~ 354432 (+) False dram2b
TU355101 lncRNA downstream 31587 758509 ~ 805095 (+) False mfap2
TU355137 lncRNA downstream 81237 808159 ~ 809350 (+) True G299679
TU355170 lncRNA downstream 111441 838363 ~ 838915 (+) True G299708
TU355157 lncRNA downstream 118546 845468 ~ 847722 (+) True G299695
TU355181 lncRNA downstream 146313 873235 ~ 873473 (+) True G299719
XM_034314229.1 mRNA upstream 71328 571588 ~ 607621 (+) True dstyk
XM_026935655.2 mRNA upstream 124237 548833 ~ 554712 (+) True ccnd3
XM_034314243.1 mRNA upstream 124237 549064 ~ 554712 (+) False ccnd3
XM_026935566.2 mRNA upstream 131332 542037 ~ 547617 (+) True bysl
XM_026935674.2 mRNA downstream 21727 748649 ~ 752616 (+) True fndc10
XM_034314256.1 mRNA downstream 26432 753354 ~ 761217 (+) True ssu72
XM_026935707.2 mRNA downstream 35344 762266 ~ 769955 (+) True tmem240b
XM_026935708.2 mRNA downstream 37436 764358 ~ 769955 (+) False tmem240b
XM_034314265.1 mRNA downstream 37501 764423 ~ 769955 (+) False tmem240b
XR_004580271.1 other upstream 158062 518567 ~ 520887 (+) False cdkn1a
TU354975 other upstream 318691 356762 ~ 360258 (+) False dram2b
TU355161 other downstream 116058 842980 ~ 844811 (+) False LOC113539702
TU355179 other downstream 136416 863338 ~ 864888 (+) False fbxo42
TU355411 other downstream 769938 1496860 ~ 1498487 (+) False LOC117599925
TU355413 other downstream 769938 1496860 ~ 1497627 (+) False LOC117599925
TU358141 other downstream 3740155 4467077 ~ 4469174 (+) False LOC113539599

Expression Profile