RNA id: TU355109


Basic Information

Item Value
RNA id TU355109
length 1663
lncRNA type inter_gene
GC content 0.41
exon number 2
gene id G299659
representative True

Chromosome Information

Item Value
chromosome id NC_047614.1
NCBI id CM018560.1
chromosome length 21552800
location 941836 ~ 943526 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TGGCATCTTTATTAGTGTTGTAAACTTTAcgaaaatacattttgttacCATTTCCCTTCTGAACACAATCCCCTCTGAGAGAACACGTAAGCTTTAACACATCATTAAAGCAACATGAAACAGTTTCCCACTCAATTCAGCTCTTTAAAtctctgcctcacacacacacacacacacacacacacacacagcTTGTTCACTCCATCACACCTTACTTTCTGAGTTCAATCTTTCTCTGCACTGGTGTACtctatgtttatgtgtgtatgagttaaAGAGTGTGAATTATAATACTGACAGAAAGTAATCTTACTAGGGACACTTGATCTAGTGTATAATACTGGACAGACAGGGAAAGAGATTCTCCTCCATACATTACAATGATGGAATTGACAAAGTAAAACacccagaaaaaaagaagagagaggtAGAGACTGAGACGATGTGAGATGATATGTatctgaacaaaaaaacaaacaataacaaaaacattgattgaaaaacactgacatttagAATATTGCAGAATGCAGCtccaaacagaacagaacagctCAGTTTAGGACACAGCACAGGAGGTTTAGTAAGGCTCAGGAGATTAAAGCTGAGATTCGGATGAAATGTGATGAAGTGTGCACTAATAAGCAAAAACACTGCAGGATGTTAGATCAGATTTACTCCATAATGCTGATGCAGAAGTCTGAGCAATCCATGAGTTAGCTACAATCTGACCTCTAGCACTCATTACCGTATTTCCCAGACTATAAGGTGCGTACAGATGTTATAATCTCTGCACAAGCATGAACAGCATCTCACTTAACATAAATAAGTGTGATTTATTGTAATCTAATGATTTGATTTGAACTTGAGCAGTTGTAGCATTATGGGGGCCTCCATCCTTATTCCCCCTTAGTGCAGTTTGTTGTCACTTGGCATCAAGGCTCCGCCTCCAAGAGTCTAAAGGTGCAGGTGTAGCTGGTACTTTAACTGATGCAGGCGATGATAaaattccacttttttccccaaagttaAATGTGTGAATACAGACTGCTGATGTTCGTCGCTGCTATTTTACACAATCATTTAATCAAAATAGAACTTACTGACCTTAATGATGTCACTTGATGTATATGTAGGTATATGAAAATTTGGACCTGTATTTAGGGATTATGGATTTACTGCGTCGGTTATATACAATAAACTCGTCTCGGCTGATCGACATTTGGGTTAAAGATGGTTCTATAATAAAGCATTTCAGAGAATTTCAGAGAATTtatgaattttgaatttatgaattttgaTTATCTGGAAAATATGGTAGTGCTCTTGTTTTATGTTGAGAAATTCCGCTTACATGTCGTACTCGGTGAAGTATGCTTCTACACCTGCCCCCTGTGTGTAAGGGACTTCGGTGTAGTGCACACGGTCAGCGTTAGGGACGGAGCTGTCAGTCGGCGCCGATCTGAGGGAACTCTTTATAAATCTGCTGCACTATGAGCTTGTCCATCTGTCTGGCCTGAGCCGAGCTCTCGTCCTCTCCGGGGTCGTCCTCCTCTCCCAGAATCCTCTGCAGCGCCGCCTGCAGGTCAGAGAGACGGTGCTGATGCTGCAGGTAATCGGTGGTGCGCACGATGGCGTGCATGAGCGAGAGATACTCCATCct

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU355181 lncRNA upstream 68363 873235 ~ 873473 (+) True G299719
TU355157 lncRNA upstream 94114 845468 ~ 847722 (+) True G299695
TU355170 lncRNA upstream 102921 838363 ~ 838915 (+) True G299708
TU355137 lncRNA upstream 132486 808159 ~ 809350 (+) True G299679
TU355101 lncRNA upstream 136741 758509 ~ 805095 (+) False mfap2
TU355199 lncRNA downstream 10909 954435 ~ 990707 (+) True G299734
TU355200 lncRNA downstream 22004 965530 ~ 1006953 (+) True G299735
TU355290 lncRNA downstream 311540 1255066 ~ 1298909 (+) True G299773
TU355306 lncRNA downstream 328621 1272147 ~ 1272673 (+) True G299787
TU355303 lncRNA downstream 335322 1278848 ~ 1301404 (+) True G299786
XM_026935756.2 mRNA upstream 15277 906429 ~ 926559 (+) True si:ch1073-335m2.2
XM_034314239.1 mRNA upstream 39255 891729 ~ 902581 (+) True fblim1
XM_034314238.1 mRNA upstream 39255 891730 ~ 902581 (+) False fblim1
XM_034314240.1 mRNA upstream 39255 893879 ~ 902581 (+) False fblim1
XM_034314241.1 mRNA upstream 39265 888372 ~ 902571 (+) False fblim1
XM_034314259.1 mRNA downstream 8017 951543 ~ 967971 (+) False ndufaf3
XM_034314261.1 mRNA downstream 8017 951543 ~ 962306 (+) False ndufaf3
XM_034314262.1 mRNA downstream 8017 951543 ~ 954334 (+) False ndufaf3
XM_026912402.2 mRNA downstream 8017 951543 ~ 953535 (+) True ndufaf3
XM_026935738.2 mRNA downstream 19501 963027 ~ 969188 (+) True LOC113539739
TU355179 other upstream 76948 863338 ~ 864888 (+) False fbxo42
TU355161 other upstream 97025 842980 ~ 844811 (+) False LOC113539702
XR_004580271.1 other upstream 420949 518567 ~ 520887 (+) False cdkn1a
TU354978 other upstream 581578 356762 ~ 360258 (+) False dram2b
TU355411 other downstream 553334 1496860 ~ 1498487 (+) False LOC117599925
TU355413 other downstream 553334 1496860 ~ 1497627 (+) False LOC117599925
TU358141 other downstream 3523551 4467077 ~ 4469174 (+) False LOC113539599
XR_003403967.2 other downstream 5720548 6664074 ~ 6779358 (+) False cpne5b
XR_004580199.1 other downstream 7558112 8501638 ~ 8558911 (+) False nfasca

Expression Profile