RNA id: TU355181


Basic Information

Item Value
RNA id TU355181
length 239
lncRNA type inter_gene
GC content 0.45
exon number 1
gene id G299719
representative True

Chromosome Information

Item Value
chromosome id NC_047614.1
NCBI id CM018560.1
chromosome length 21552800
location 873235 ~ 873473 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

aatGCATGTAACCGTGAAGGGGACAGCCAAAGagaacacactaaaacacacactcaaaccaCAACAGACATGAGACGTTTCTGCCTTAATGTTCTACTACTCTTGGTCTGGAAGGTTGTGAGGGAatctacaaagaaaaacaaagctggAAATTCCTCCAGACGTGGAGCTGGATACAAGACCAGGCCTCGTTAGTGTTTGTTAATCCAGCTGAACGTGTACAGTGATACGGTGTAAGC

Function

GO:

id name namespace
GO:0008289 lipid binding molecular_function

KEGG:

id description
ko04975 Fat digestion and absorption
ko04979 Cholesterol metabolism
ko04977 Vitamin digestion and absorption

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU355157 lncRNA upstream 25513 845468 ~ 847722 (+) True G299695
TU355170 lncRNA upstream 34320 838363 ~ 838915 (+) True G299708
TU355137 lncRNA upstream 63885 808159 ~ 809350 (+) True G299679
TU355101 lncRNA upstream 68140 758509 ~ 805095 (+) False mfap2
TU355094 lncRNA upstream 146313 678949 ~ 726922 (+) False LOC117599902
TU355109 lncRNA downstream 68363 941836 ~ 943526 (+) True G299659
TU355199 lncRNA downstream 80962 954435 ~ 990707 (+) True G299734
TU355200 lncRNA downstream 92057 965530 ~ 1006953 (+) True G299735
TU355290 lncRNA downstream 381593 1255066 ~ 1298909 (+) True G299773
TU355306 lncRNA downstream 398674 1272147 ~ 1272673 (+) True G299787
XM_034314473.1 mRNA upstream 479 863258 ~ 872756 (+) True fbxo42
XM_026935682.2 mRNA upstream 28365 842853 ~ 844870 (+) True LOC113539702
XM_034314266.1 mRNA upstream 68137 793947 ~ 805098 (+) True mfap2
XM_034314245.1 mRNA upstream 80182 786355 ~ 793053 (+) True sdhb
XM_026935708.2 mRNA upstream 103280 764358 ~ 769955 (+) False tmem240b
XM_026935675.2 mRNA downstream 1920 875393 ~ 883546 (+) True slc25a34
XM_026935676.2 mRNA downstream 1990 875463 ~ 883546 (+) False slc25a34
XM_026935193.2 mRNA downstream 11242 884715 ~ 888350 (+) True LOC113539452
XM_034314241.1 mRNA downstream 14899 888372 ~ 902571 (+) False fblim1
XM_034314239.1 mRNA downstream 18256 891729 ~ 902581 (+) True fblim1
TU355179 other upstream 8347 863338 ~ 864888 (+) False fbxo42
TU355161 other upstream 28424 842980 ~ 844811 (+) False LOC113539702
XR_004580271.1 other upstream 352348 518567 ~ 520887 (+) False cdkn1a
TU354977 other upstream 512977 356762 ~ 360258 (+) False dram2b
TU355411 other downstream 623387 1496860 ~ 1498487 (+) False LOC117599925
TU355413 other downstream 623387 1496860 ~ 1497627 (+) False LOC117599925
TU358141 other downstream 3593604 4467077 ~ 4469174 (+) False LOC113539599
XR_003403967.2 other downstream 5790601 6664074 ~ 6779358 (+) False cpne5b
XR_004580199.1 other downstream 7628165 8501638 ~ 8558911 (+) False nfasca

Expression Profile