RNA id: TU355199


Basic Information

Item Value
RNA id TU355199
length 607
lncRNA type read_through
GC content 0.43
exon number 2
gene id G299734
representative True

Chromosome Information

Item Value
chromosome id NC_047614.1
NCBI id CM018560.1
chromosome length 21552800
location 954435 ~ 990707 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

aagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtggagaggcAAGACGAGACGTGTCATGCTTCAGTCGTGTAGCTGCAGGCAGAATTCAGCTCGAATACTCGTGTAGGTGTAAAACGTGTCGAGGCAGCTGCTTTACACTGAAAAGACTgtaacagtacacacacacacacacacacacacacacacacacactcactcaaacacacacttacccagttGAAGGGCGTTTGTGAAACTCTGAAGGTCTGAAAGTTTCcttctttattattttgtctttttttttttcttcttcctcacctGATCCATCGTCTTCACTCCTGCAAACACAACAACAGgtttaaaacacaacaaacaacaacgacaaacaaaccaataaacaacGGCAGAAAGCTTGCAGAGCGACGGCGTAGTTTCATCTGCCAGAAATTACACAatccaaaaaagcaaaaaggggaaGAGGGGATGAGAAGACGAGAGGAAGTCTGCAATCTGTTagtgaagaaagagaaagaaagaaataaagaaataaaaaaaaaaaacagtaagagAAATCCAGAGATGTGTTCACAGCTGACCTGAAGCGCG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU355109 lncRNA upstream 10909 941836 ~ 943526 (+) True G299659
TU355181 lncRNA upstream 80962 873235 ~ 873473 (+) True G299719
TU355157 lncRNA upstream 106713 845468 ~ 847722 (+) True G299695
TU355170 lncRNA upstream 115520 838363 ~ 838915 (+) True G299708
TU355137 lncRNA upstream 145085 808159 ~ 809350 (+) True G299679
TU355290 lncRNA downstream 264359 1255066 ~ 1298909 (+) True G299773
TU355306 lncRNA downstream 281440 1272147 ~ 1272673 (+) True G299787
TU355303 lncRNA downstream 288141 1278848 ~ 1301404 (+) True G299786
TU355362 lncRNA downstream 365615 1356322 ~ 1356838 (+) True G299833
TU355383 lncRNA downstream 417795 1408502 ~ 1437257 (+) True G299851
XM_034314262.1 mRNA upstream 101 951543 ~ 954334 (+) False ndufaf3
XM_026912402.2 mRNA upstream 900 951543 ~ 953535 (+) True ndufaf3
XM_026935756.2 mRNA upstream 27876 906429 ~ 926559 (+) True si:ch1073-335m2.2
XM_034314239.1 mRNA upstream 51854 891729 ~ 902581 (+) True fblim1
XM_034314238.1 mRNA upstream 51854 891730 ~ 902581 (+) False fblim1
XM_034314222.1 mRNA downstream 18142 1008849 ~ 1083835 (+) True LOC113539455
XM_034314223.1 mRNA downstream 40467 1031174 ~ 1083835 (+) False LOC113539455
XM_034314221.1 mRNA downstream 98146 1088853 ~ 1098976 (+) True LOC113539532
XM_034314219.1 mRNA downstream 112119 1102826 ~ 1112909 (+) True LOC113539531
XM_034314217.1 mRNA downstream 127143 1117850 ~ 1129548 (+) True LOC117595666
TU355179 other upstream 89547 863338 ~ 864888 (+) False fbxo42
TU355161 other upstream 109624 842980 ~ 844811 (+) False LOC113539702
XR_004580271.1 other upstream 433548 518567 ~ 520887 (+) False cdkn1a
TU354978 other upstream 594177 356762 ~ 360258 (+) False dram2b
TU355411 other downstream 506153 1496860 ~ 1498487 (+) False LOC117599925
TU355413 other downstream 506153 1496860 ~ 1497627 (+) False LOC117599925
TU358141 other downstream 3476370 4467077 ~ 4469174 (+) False LOC113539599
XR_003403967.2 other downstream 5673367 6664074 ~ 6779358 (+) False cpne5b
XR_004580199.1 other downstream 7510931 8501638 ~ 8558911 (+) False nfasca

Expression Profile