RNA id: TU355290


Basic Information

Item Value
RNA id TU355290
length 2214
lncRNA type inter_gene
GC content 0.48
exon number 2
gene id G299773
representative True

Chromosome Information

Item Value
chromosome id NC_047614.1
NCBI id CM018560.1
chromosome length 21552800
location 1255066 ~ 1298909 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

tccacacacacacacacacacacacacacacacacacaaatacacacagaaacatgatTCCATCCACAAAAAGACAACAGTTCAAAAAACTCTAAAAACCAATGGCACTTTAAACTCTTCCAGTTTGCTCCACGTGAAGAACGAGACGGTGGACGAGGATtccagctctgtgctttggcagATGATGAAATACGACCGTGTGAAATGTTCCTGTGACATCATCCAGCATCCAGCAGTGGTCATGCATCAGACAGAGGCTTCGGGTGAACTTTAAGTTGCGAGGTTTTGTTTAATCTTTGTTTAAAGTACGTCGTGTGTTATTTGGCCTTTAAATCCGCAACGCCACCGATGCAGGGATgcgagaaaaacaaaagaaatccaGCAGATTAAAGCTGAAACACaggacaattaaaaaaaaacaaaaaaacagtgcagACAGACATCGTAATACAGAGATCATAAACACACGTGAAAAACACGTGCGGAGCGTTTACGGCACAGGAACGGTTCCGCACTTTTCCACAGCACAAGATCGAAAGGTTCTGAAACGGTTAAAGGATGCATGTGTGGTTAATAAACTCACTACGTCACTGACGGATAGTCATGGCTGCGTCTGCGTTAGAGCTGGGCGATGAGTATAAAACACTGCGATATTTTACTGAGGTAAAAATTATGTGATGATTATTACGAATAATTCATTTACAAAGGTGCGGTGTAGAGTCACGTACGCTTCATTACCAAGTTCATTTCCATACAAGATCCATCTCTCCGTCCTGCTGAACGCTAAACCATCGACATGAAcaaattttcagaaaaaaaaaacaaaacaaaaaacatggcaTTATCGATGAAACCTTCAGTCATCGCCCAGCTCTAATCTCTCATCTGCTTTTAATCTCCTCAGCGTGGAGGTCTGCGATCTCCTGATACGACTCCTCTCATCGCTCCTCGTGGTGTTTTTCCGCCAGCGCAGCAAGCCTAATGTGGAACCGCTGCCCACTTCTCCACCGCTAAAGGCGGGTTCTCAGCCAACAAAATCAGTCTGATTCTCGCACCAGACTGCTGCTGAAATGGAAACGTTACAAAGACATCAACCGTGCAAGCTGGAATTTGGAGATTACTGACTAAATTAATATTCGGATGAATGTTTTACTGGGACTTTTTTATAAATGAATCGGTCAGAATTGAATTTCATTGTGCCCTCCATAACACTCCTTAACATCTGATGATGTACCTTAAATGAGTGTTAAAGGTCCACCACATGCTGGCTGAAGATACGGAAATGTTTTCTGAGTGGACGGGAAGACGCGTAAGGAACGCTTAGCAGCTACATCTTTAAAACTAACACCTCTGTtgagtctctgtgctgtgtgtagatTTTGAATGGTACCAGATGTACATAAGGTCCGTCTCTCAGACCGGTGGAAACGCAGGTGTAGGTTCCCTGAAGCAGCTCTGGCTCTGTGTTAGTGGAAAAGGCGCGTCAGCTTGGGAACCATCAGCGCGGAGCGTAAACCTCTTTCACGTCTGTCCTTGTGTAGTTCACGGTGCTGTGCAGCAGGGGGCAGCACAAAACTAAAACGCTCACTGTAAAGCAGCAGAGAAGGCGTCTCTTTCGTTCGGCTTCTCTTTCATCCGCCTCGTTCCGCCGTTCCTGCGTTAGCATTGGCTCAGCAGGTTGTGTTTTGATCACTGCAGAAAGGCCAGCGTCAGCAGTACCACCAGCGCCCCCTGCAGGCTGAGCCCTGCTCTGTGTCCGGACGCTCTCTGCGAGCATGTCGCGCCCGTGTAGCCGGtgtagcactgacactggaagtCCTCGTTTAGCCTCGCCAGCTCCTCCTGGTCCATCCTTCCGCGCACGGCGAGCCGACCCTGCTGCacctccagtgtgtgtgtgcgagtgctCAGGTGCAGGTAGGTGTCTGTGTCGGGGAGCCTGCGCAGGCAGCGTCCGTGCCACCCACACAGCTGCGCGCTGCACTGCTCCGCTGCGGAGGAAACGTTGAGCAGGTAGCGGCCGAGGGCGCCGGTGCGGAGGTACTCACTCAGGTTGGAGCAGCTCGTCTGCACGTTACAACAAAACACAAGAGTCAAACAAGTCAAACTCGACACCAACGGCGTGCAAAGACACGCCTCCGCCACCAACAACTATAATGTGTGCCTCAAATActtaaaatatacactatacagccaaaagtatgtggacacctg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU355200 lncRNA upstream 248113 965530 ~ 1006953 (+) True G299735
TU355199 lncRNA upstream 264359 954435 ~ 990707 (+) True G299734
TU355109 lncRNA upstream 311540 941836 ~ 943526 (+) True G299659
TU355181 lncRNA upstream 381593 873235 ~ 873473 (+) True G299719
TU355157 lncRNA upstream 407344 845468 ~ 847722 (+) True G299695
TU355362 lncRNA downstream 57413 1356322 ~ 1356838 (+) True G299833
TU355383 lncRNA downstream 109593 1408502 ~ 1437257 (+) True G299851
TU355388 lncRNA downstream 187541 1486450 ~ 1494645 (+) False erc2
XR_004580234.1 lncRNA downstream 301784 1600693 ~ 1604586 (+) True LOC117599906
TU355401 lncRNA downstream 321891 1620800 ~ 1622584 (+) True G299862
XM_034314215.1 mRNA upstream 30777 1211519 ~ 1224289 (+) True LOC113539456
XM_034314218.1 mRNA upstream 64768 1179339 ~ 1190298 (+) True LOC113539523
XM_034314224.1 mRNA upstream 79693 1164088 ~ 1175373 (+) True LOC113539522
XM_034314216.1 mRNA upstream 104156 1139608 ~ 1150910 (+) True LOC117599896
XM_034314217.1 mRNA upstream 125518 1117850 ~ 1129548 (+) True LOC117595666
XM_034314474.1 mRNA downstream 14798 1313707 ~ 1314702 (+) True LOC117599924
XM_026935334.2 mRNA downstream 41536 1340445 ~ 1344256 (+) True LOC113539530
XM_034314255.1 mRNA downstream 41536 1340445 ~ 1344256 (+) False LOC113539530
XM_026935715.2 mRNA downstream 63563 1362472 ~ 1372744 (+) True bap1
XM_026935386.2 mRNA downstream 77570 1376479 ~ 1444625 (+) True bsnb
TU355179 other upstream 390178 863338 ~ 864888 (+) False fbxo42
TU355161 other upstream 410255 842980 ~ 844811 (+) False LOC113539702
XR_004580271.1 other upstream 734179 518567 ~ 520887 (+) False cdkn1a
TU354978 other upstream 894808 356762 ~ 360258 (+) False dram2b
TU355411 other downstream 197951 1496860 ~ 1498487 (+) False LOC117599925
TU355413 other downstream 197951 1496860 ~ 1497627 (+) False LOC117599925
TU358141 other downstream 3168168 4467077 ~ 4469174 (+) False LOC113539599
XR_003403967.2 other downstream 5365165 6664074 ~ 6779358 (+) False cpne5b
XR_004580199.1 other downstream 7202729 8501638 ~ 8558911 (+) False nfasca

Expression Profile