RNA id: TU355362


Basic Information

Item Value
RNA id TU355362
length 339
lncRNA type inter_gene
GC content 0.62
exon number 2
gene id G299833
representative True

Chromosome Information

Item Value
chromosome id NC_047614.1
NCBI id CM018560.1
chromosome length 21552800
location 1356322 ~ 1356838 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GTGAGGTTTGACAGCACGGGCGAGCTGCGGGGCGAGGAACAGGTCGTCCTCCTCGGCCGGGTGGTTGATGTTGACCAGCACTCTGCCCTGAGCGTCCGGCTGGTTCAGGGCGTCGTTGATGTGCGAGCCGCTGCTCTCCTCTGTCCCGGGCGAAGTCGAGCGCTCGTCGTCCTCCTCACTGATGTGGAACGTTTCCTCATCACCTGAGCTCAGCTCAatcacatcctctctggGTGCAGGTTTGGGAGGAGGTGCAGATCCTCTGGACTCGCCCTCGTCTCCGCTGCTGTCCAGGCAAATCACCTCGCCCTTAACAACGCTCGCCAAGGAGGGCAACTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU355303 lncRNA upstream 54918 1278848 ~ 1301404 (+) True G299786
TU355290 lncRNA upstream 57413 1255066 ~ 1298909 (+) True G299773
TU355306 lncRNA upstream 83649 1272147 ~ 1272673 (+) True G299787
TU355200 lncRNA upstream 349369 965530 ~ 1006953 (+) True G299735
TU355199 lncRNA upstream 365615 954435 ~ 990707 (+) True G299734
TU355383 lncRNA downstream 51664 1408502 ~ 1437257 (+) True G299851
TU355388 lncRNA downstream 129612 1486450 ~ 1494645 (+) False erc2
XR_004580234.1 lncRNA downstream 243855 1600693 ~ 1604586 (+) True LOC117599906
TU355401 lncRNA downstream 263962 1620800 ~ 1622584 (+) True G299862
TU355461 lncRNA downstream 269255 1626093 ~ 1640428 (+) True G299916
XM_026935334.2 mRNA upstream 12066 1340445 ~ 1344256 (+) True LOC113539530
XM_034314255.1 mRNA upstream 12066 1340445 ~ 1344256 (+) False LOC113539530
XM_034314474.1 mRNA upstream 41620 1313707 ~ 1314702 (+) True LOC117599924
XM_034314215.1 mRNA upstream 132033 1211519 ~ 1224289 (+) True LOC113539456
XM_034314218.1 mRNA upstream 166024 1179339 ~ 1190298 (+) True LOC113539523
XM_026935715.2 mRNA downstream 5634 1362472 ~ 1372744 (+) True bap1
XM_026935386.2 mRNA downstream 19641 1376479 ~ 1444625 (+) True bsnb
XM_026935387.2 mRNA downstream 19641 1376479 ~ 1444625 (+) False bsnb
XM_026935436.2 mRNA downstream 91604 1448442 ~ 1492295 (+) True erc2
XM_026935442.2 mRNA downstream 91604 1448442 ~ 1492295 (+) False erc2
TU355179 other upstream 491434 863338 ~ 864888 (+) False fbxo42
TU355161 other upstream 511511 842980 ~ 844811 (+) False LOC113539702
XR_004580271.1 other upstream 835435 518567 ~ 520887 (+) False cdkn1a
TU354978 other upstream 996064 356762 ~ 360258 (+) False dram2b
TU355411 other downstream 140022 1496860 ~ 1498487 (+) False LOC117599925
TU355413 other downstream 140022 1496860 ~ 1497627 (+) False LOC117599925
TU358141 other downstream 3110239 4467077 ~ 4469174 (+) False LOC113539599
XR_003403967.2 other downstream 5307236 6664074 ~ 6779358 (+) False cpne5b
XR_004580199.1 other downstream 7144800 8501638 ~ 8558911 (+) False nfasca

Expression Profile