RNA id: TU355401


Basic Information

Item Value
RNA id TU355401
length 1757
lncRNA type inter_gene
GC content 0.40
exon number 2
gene id G299862
representative True

Chromosome Information

Item Value
chromosome id NC_047614.1
NCBI id CM018560.1
chromosome length 21552800
location 1620800 ~ 1622584 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

aatttattatttttttttgtaaaattggtACAAAAAACCAAGATAAGGCACTCTGTTACATGTGACCATTGCATTAGAGTCTGAACAAAGTTTCATAAAAATATCAATGTTTTATGTAAAACCTCAGATTTCATAAATGCCTTTATTTTAAAACGTTGAAAAAAAGTAGCCATGTTTTTTCACACTGCTATAAGTGAGGAACAGCAATAAGCAGGAGCTTATCAGCATGAGCTCACTAATTACTGGCTTCCTGGTACAATCAATTCAGCCGCAGCAGCAGCTCCACTTTGCGTCACTTAACCGTTCCTGCTCTTATACGATAATCACGCTGTGTGAAATAAGTGTGTGCCGACTACATGGTtctcaccctttttttttttatctaaggCTGTCATTTTTACCCTCCAGCCTGCAGGTAAAAGAAATCTACCTGCGTAAGATGGCCGTGAATTGCTACTGGCTGGCACAGATTTGATTGTAATCATGATTTATAAAGTGTACTATTTTTAAGTACGCACcacttttaataaatttacaaaatgaaaaacgaCTAGCGATATTGAGGACTTGAGATATTTGCAGGGCCCGCTTGGCACCCCAGTGTGGCCGCTGTGTTAGACACTTGGAGTTGATGTTTGTCACTTATGTGGCTCCAGGGCTGTCTCTTTATCCGTATCACCATGCTGctgtcatttaaaaacaaagtttAAGCATAACATTAGTATAATTAAGTATTATTTGCTGTCTAGTGACAGACTGTCATTCATGTTTTAGCCAGTGACTCTGCAACAGAGCGACATTTGGATTCAGATGTCCTCAGTTGTGTGTAAATCAGGGGTGACACAATGAAACGactggctcgaatgattcctcggaccgtGCTGGAACGCAGGGTTACAGACGCAGCTTGGTCAGGCCTTGTCTTGTAGTGTAGATCAGGCTAAAACAGCCAGCTAGTGTTTGCATTAGTGACGGTAATTTAAAGTGTCCACAATAATACCTTGGTGATATTTTTCTGATATATTGTCTGACTGATTATCGGCACATCCCTAGTCCACAGCAGCACCTCGTGGCAGAGCATCATGAGCTCCTTAGTGCCTTTTACttgaaaaaaattttaaaattcagtaaaaattAGTGCACATGGAAGTCCCTGTGAAGCCACATACATGTATACgatgtgaaatattttaaaaaaaatctgtaatggTGTCCAAACCCAGTGTTTCCTCAAATCTAacatatttatccatttataaacCCACGCGAATGTGCCCCGGATTCAgaacttttgtttgtttttttccccaaaaagtgaCAAAATGAGCATTACTGTCATACACAGTAATGCCAGATTGATCTGAGCCACCAGTGTaaactctaacacacacctcagtgaaGTCATTCGAGCCGGCACTGTTCTGTACTCCACACACTCGGAGAGAAAACAAAACGGAAAGATGTAGTTTTCTAGTGGAAAAAATAACGTTAACCAAAAGGAGAGAGACGTTTTAAACAGCTTTGGGCGTATTCCGTTATGTCATTTACGGTATGTACACaatcctttaaaaaaactttgtaaGGCACTTTAAACCTGCTGTGTTTTTCCATGTTAGtgtaaaactgttaaaaactgTAACAGTGTGTGAGCTTATCTCCCCAGACCATCTTCTGTGTACCAGATCAGAACCTCTCGGACCTTCCTCCCGATCCCGAGAGCGGCGAAGCCCAGAGCGCTGCTCGAACCCGACGCCGCC

Function

GO:

id name namespace
GO:0019825 oxygen binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_004580234.1 lncRNA upstream 16214 1600693 ~ 1604586 (+) True LOC117599906
TU355388 lncRNA upstream 126155 1486450 ~ 1494645 (+) False erc2
TU355383 lncRNA upstream 183543 1408502 ~ 1437257 (+) True G299851
TU355362 lncRNA upstream 263962 1356322 ~ 1356838 (+) True G299833
TU355303 lncRNA upstream 319396 1278848 ~ 1301404 (+) True G299786
TU355461 lncRNA downstream 3509 1626093 ~ 1640428 (+) True G299916
TU356239 lncRNA downstream 198037 1820621 ~ 1822339 (+) True G300447
TU356266 lncRNA downstream 232117 1854701 ~ 1857401 (+) True G300467
TU356290 lncRNA downstream 297943 1920527 ~ 1924467 (+) True G300479
TU356299 lncRNA downstream 320842 1943426 ~ 1944198 (+) True G300487
XM_034314499.1 mRNA upstream 450 1608449 ~ 1620350 (+) True ninj1
XM_026935723.2 mRNA upstream 450 1608706 ~ 1620350 (+) False ninj1
XM_026935724.2 mRNA upstream 450 1610530 ~ 1620350 (+) False ninj1
XM_034314475.1 mRNA upstream 121628 1497715 ~ 1499172 (+) True LOC117599925
XM_026935436.2 mRNA upstream 128505 1448442 ~ 1492295 (+) True erc2
XM_034314184.1 mRNA downstream 37624 1660208 ~ 1752294 (+) False cacna1da
XM_026935291.2 mRNA downstream 37624 1660208 ~ 1752294 (+) True cacna1da
XM_026935295.2 mRNA downstream 37624 1660208 ~ 1752294 (+) False cacna1da
XM_034314183.1 mRNA downstream 37624 1660208 ~ 1752294 (+) False cacna1da
XM_026935290.2 mRNA downstream 37624 1660208 ~ 1752294 (+) False cacna1da
TU355411 other upstream 122313 1496860 ~ 1498487 (+) False LOC117599925
TU355413 other upstream 123173 1496860 ~ 1497627 (+) False LOC117599925
TU355179 other upstream 755912 863338 ~ 864888 (+) False fbxo42
TU355161 other upstream 775989 842980 ~ 844811 (+) False LOC113539702
XR_004580271.1 other upstream 1099913 518567 ~ 520887 (+) False cdkn1a
TU358141 other downstream 2844493 4467077 ~ 4469174 (+) False LOC113539599
XR_003403967.2 other downstream 5041490 6664074 ~ 6779358 (+) False cpne5b
XR_004580199.1 other downstream 6879054 8501638 ~ 8558911 (+) False nfasca
XR_004580200.1 other downstream 6879054 8501638 ~ 8558788 (+) False nfasca
TU362120 other downstream 8890087 10512671 ~ 10513270 (+) True G305515

Expression Profile