Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU355411 |
| length | 459 |
| RNA type | TUCP |
| GC content | 0.54 |
| exon number | 3 |
| gene id | LOC117599925 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_047614.1 |
| NCBI id | CM018560.1 |
| chromosome length | 21552800 |
| location | 1496860 ~ 1499172 (+) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU355388 | lncRNA | upstream | 2215 | 1486450 ~ 1494645 (+) | False | erc2 |
| TU355383 | lncRNA | upstream | 59603 | 1408502 ~ 1437257 (+) | True | G299851 |
| TU355362 | lncRNA | upstream | 140022 | 1356322 ~ 1356838 (+) | True | G299833 |
| TU355303 | lncRNA | upstream | 195456 | 1278848 ~ 1301404 (+) | True | G299786 |
| TU355290 | lncRNA | upstream | 197951 | 1255066 ~ 1298909 (+) | True | G299773 |
| XR_004580234.1 | lncRNA | downstream | 102206 | 1600693 ~ 1604586 (+) | True | LOC117599906 |
| TU355401 | lncRNA | downstream | 122313 | 1620800 ~ 1622584 (+) | True | G299862 |
| TU355461 | lncRNA | downstream | 127606 | 1626093 ~ 1640428 (+) | True | G299916 |
| TU356239 | lncRNA | downstream | 322134 | 1820621 ~ 1822339 (+) | True | G300447 |
| TU356266 | lncRNA | downstream | 356214 | 1854701 ~ 1857401 (+) | True | G300467 |
| XM_026935436.2 | mRNA | upstream | 4565 | 1448442 ~ 1492295 (+) | True | erc2 |
| XM_026935442.2 | mRNA | upstream | 4565 | 1448442 ~ 1492295 (+) | False | erc2 |
| XM_026935386.2 | mRNA | upstream | 52235 | 1376479 ~ 1444625 (+) | True | bsnb |
| XM_026935387.2 | mRNA | upstream | 52235 | 1376479 ~ 1444625 (+) | False | bsnb |
| XM_026935715.2 | mRNA | upstream | 124116 | 1362472 ~ 1372744 (+) | True | bap1 |
| XM_034314499.1 | mRNA | downstream | 109962 | 1608449 ~ 1620350 (+) | True | ninj1 |
| XM_026935723.2 | mRNA | downstream | 110219 | 1608706 ~ 1620350 (+) | False | ninj1 |
| XM_026935724.2 | mRNA | downstream | 112043 | 1610530 ~ 1620350 (+) | False | ninj1 |
| XM_034314184.1 | mRNA | downstream | 161721 | 1660208 ~ 1752294 (+) | False | cacna1da |
| XM_026935291.2 | mRNA | downstream | 161721 | 1660208 ~ 1752294 (+) | True | cacna1da |
| TU355179 | other | upstream | 631972 | 863338 ~ 864888 (+) | False | fbxo42 |
| TU355161 | other | upstream | 652049 | 842980 ~ 844811 (+) | False | LOC113539702 |
| XR_004580271.1 | other | upstream | 975973 | 518567 ~ 520887 (+) | False | cdkn1a |
| TU354977 | other | upstream | 1136602 | 356762 ~ 360258 (+) | False | dram2b |
| TU358141 | other | downstream | 2968590 | 4467077 ~ 4469174 (+) | False | LOC113539599 |
| XR_003403967.2 | other | downstream | 5165587 | 6664074 ~ 6779358 (+) | False | cpne5b |
| XR_004580199.1 | other | downstream | 7003151 | 8501638 ~ 8558911 (+) | False | nfasca |
| XR_004580200.1 | other | downstream | 7003151 | 8501638 ~ 8558788 (+) | False | nfasca |
| TU362120 | other | downstream | 9014184 | 10512671 ~ 10513270 (+) | True | G305515 |
