RNA id: TU355461


Basic Information

Item Value
RNA id TU355461
length 400
lncRNA type inter_gene
GC content 0.42
exon number 2
gene id G299916
representative True

Chromosome Information

Item Value
chromosome id NC_047614.1
NCBI id CM018560.1
chromosome length 21552800
location 1626093 ~ 1640428 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

tttgttttttttttttttaataattgcgAATGTTAACGTATGTAATTATATctataattttgtaattattatgtaatttataACGTTAAAAAAGAGACATTTAGGGCTGTAAATAATGACCTCATATACCGGAAGTGGTGCCGAAGAGCCTTCAAGTACCGGAAGTGGCGCAAGAGAGACCACACATAACGGAAGTTCCGCCAAAAATCAGTGATTCTTGGTAGCATAAAAGTCGGTGTCACGGGAAAGGGGAAGGGGGAGACCCCGAAGCTGAGCTCATCCTgctgggaggaaaaaaagacgTGATTCCTTAAAGATGTGTCTCTTCACCACTGGGACATGTAGTCCTCTCTGCGGTCAGCTGTGTCCAAGTGACTCCCACGTGCAATACAATACCCGG

Function

GO: NA

KEGG:

id description
ko04923 Regulation of lipolysis in adipocytes

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU355401 lncRNA upstream 3509 1620800 ~ 1622584 (+) True G299862
XR_004580234.1 lncRNA upstream 21507 1600693 ~ 1604586 (+) True LOC117599906
TU355388 lncRNA upstream 131448 1486450 ~ 1494645 (+) False erc2
TU355383 lncRNA upstream 188836 1408502 ~ 1437257 (+) True G299851
TU355362 lncRNA upstream 269255 1356322 ~ 1356838 (+) True G299833
TU356239 lncRNA downstream 180193 1820621 ~ 1822339 (+) True G300447
TU356266 lncRNA downstream 214273 1854701 ~ 1857401 (+) True G300467
TU356290 lncRNA downstream 280099 1920527 ~ 1924467 (+) True G300479
TU356299 lncRNA downstream 302998 1943426 ~ 1944198 (+) True G300487
XR_003403969.2 lncRNA downstream 367182 2007610 ~ 2021578 (+) True LOC113539753
XM_034314499.1 mRNA upstream 5743 1608449 ~ 1620350 (+) True ninj1
XM_026935723.2 mRNA upstream 5743 1608706 ~ 1620350 (+) False ninj1
XM_026935724.2 mRNA upstream 5743 1610530 ~ 1620350 (+) False ninj1
XM_034314475.1 mRNA upstream 126921 1497715 ~ 1499172 (+) True LOC117599925
XM_026935442.2 mRNA upstream 133798 1448442 ~ 1492295 (+) False erc2
XM_034314184.1 mRNA downstream 19780 1660208 ~ 1752294 (+) False cacna1da
XM_026935291.2 mRNA downstream 19780 1660208 ~ 1752294 (+) True cacna1da
XM_026935295.2 mRNA downstream 19780 1660208 ~ 1752294 (+) False cacna1da
XM_034314183.1 mRNA downstream 19780 1660208 ~ 1752294 (+) False cacna1da
XM_026935290.2 mRNA downstream 19780 1660208 ~ 1752294 (+) False cacna1da
TU355411 other upstream 127606 1496860 ~ 1498487 (+) False LOC117599925
TU355413 other upstream 128466 1496860 ~ 1497627 (+) False LOC117599925
TU355179 other upstream 761205 863338 ~ 864888 (+) False fbxo42
TU355161 other upstream 781282 842980 ~ 844811 (+) False LOC113539702
XR_004580271.1 other upstream 1105206 518567 ~ 520887 (+) False cdkn1a
TU358141 other downstream 2826649 4467077 ~ 4469174 (+) False LOC113539599
XR_003403967.2 other downstream 5023646 6664074 ~ 6779358 (+) False cpne5b
XR_004580199.1 other downstream 6861210 8501638 ~ 8558911 (+) False nfasca
XR_004580200.1 other downstream 6861210 8501638 ~ 8558788 (+) False nfasca
TU362120 other downstream 8872243 10512671 ~ 10513270 (+) True G305515

Expression Profile