RNA id: TCONS_00008018


Basic Information

Item Value
RNA id TCONS_00008018
length 8704
RNA type mRNA
GC content 0.44
exon number 33
gene id XLOC_004191
representative False

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 29574743 ~ 29658396 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TTTTGATTTGACACTTCTTGTGCTTATTACAAAAGTTGTCCCGTGTAATCAATCATCTGGGTTTAAAGAGCAGGACCTGACAGTTTAATTGTTGGAATGCCTTATTTCTTAGAGTGAGGAGGATTTCCTGGATGACTTTTCAGACTTTGATGACATCAGCATTCACAGTGCCTCTGTACGCTCAGACACTTCAGCGGCAGCAAAAAAGAAGTCAAGTCGCAAAGgacgaaaaaaaagaaaaaGAGAGGATGGAGACGGCTACGAGACAGACCATCAAGACTACTGTGAGGTTTGTCAGCAGGGAGGAGAAATCATTCTGTGCGACACCTGTCCCAGAGCATATCACCTGGTGTGTCTGGATCCAGAGCTGGAAAAAGCCCCCGAGGGCAAATGGAGCTGCCCCCACTGTGAAAAAGAAGGGATTCAGTGGGAGGCCAAAGATGACGAAGAGGAGGAAGATGAGGTTGCAGGTGAAGAGGAAGATGACCATATGGAATTCTGCAGAGTGTGTAAGGATGGAGGAGAGCTGCTGTGTTGTGACACATGTCCTTCCTCCTACCACATCCACTGTCTCAACCCACCACTTCCTGAGATTCCCAATGGAGAGTGGCTGTGCCCACGATGCATGTGTCCACCTCTAAAAGGCAAAGTCCAGAAGATTCTGCATTGGTCGTGGGGCGATCCTCCTCTGCCACCTGAGGTTCCCCTTGGGCCGGATGGGGAGAAGGTGGACAATCTGGCCAAAACACCACTTAAAGGCCGTCCAGAGAGGCAGCTGTTTGTAAAATGGGCTGGCCTGTCCTACTGGCACTGCTCCTGGGTCAGCGAACTACAGTTGGAGCTGTATCACACAGTAATGTACCGGAACTACCAGCGCAAGAATGACATGGATGAACCGCCACCGTACGACTACGGCTCTGGGGAGGAGGAGCTTAATAATGAGAAGAGGCGGAGCAAAGACCCTCAGTATGCTGCCATGGAGGAGCGTTTCTACCGCTACGGCATCAAGCCAGAGTGGCTGATCATTCACCGCATCCTCAACCACAGTTTTGATAAGGATGGAGATGTACAGTACTTGATAAAGTGGAGAGATCTGCCGTATGATCAGTGCAGCTGGGAGGCTGATGACTTCGACGTCCCAGATTATGACAGCCTTAAACAAGCCTACTGGGATCACAGAAACCAGGTGCTCGGTGAAAATCATCAGCCCCTGCTGTTCAGGAAGGGAAAAAGACCCAAAGAGGAAATGAAGAGGAGAGAGCCTCCACCAGACACTCCAGTTGTGGATCCCACCATCAAGTTTGAACAGCAGCCATGGTACATCGATGACACTGGGGGAACTTTGCACCCGTACCAGCTTGAAGGTCTGAATTGGTTGCGCTTCTCTTGGGCTCAAGGAACCGACACAATCTTGGCTGATGAAATGGGACTTGGCAAGACTGTGCAGACTATAGTGTTCCTGTACTCACTCTACAAAGAGGGTCATTCCAAAGGGCCGTTTCTGGTCAGCGCGCCACTTTCCACCATCATCAACTGGGAGAGGGAGTTTGAAATGTGGGCTCCAGATTTCTACGTGGTCACTTACACGGGGGACAAAGAGAGCCGGGCTATCATACGTGAAAACGAGTTCACTTTTGAGGACAGCGCTGTCAAATCAGGACGCAAGGTTTTCCGCATGAAGAAGGACACGCCAATTAAGTTTCATGTCCTGCTGACATCATATGAACTGATCACCATTGATCAGGCTATACTCGGCTCCATTACCTGGGCCTGTTTGGTTGTGGATGAAGCCCACCGACTGAAGAATAACCAGTCAAAGTTTTTCAGAATTCTCAATGGCTACAAAATCTACTATAAGCTGCTCTTGACTGGAACCCCTTTGCAGAACAATCTGGAAGAGCTTTTTCACCTGCTCAACTTCCTCACCCCGGAGCGCTTCAATAACCTGGAGGGCTTTCTGGAGGAGTTTGCGGACATCTCGAAAGAGGACCAGATTAAGAAACTTCACGACCTGCTGGGGCCACACATGCTCAGGAGATTGAAAGCTGATGTGTTTAAGAACATGCCAGCAAAAACCGAGCTCATCGTGCGAGTTGAACTCAGCCCTATGCAGAAGAAATACTACAAGTTTATTTTAACAAGGAACTTTGAGGCTTTGAATTCCAAAGGAGGAGGGAACCAGGTGTCCCTTCTGAACATCATGATGGACCTGAAGAAATGCTGTAACCATCCCTACCTGTTTCCAGTGGCTGCAGTGGAAGCTCCGGTGTTACCCAATGGCTCTTATGATGGTAACCTTCTGGTAAAATCCTCAGGGAAACTCACCCTGCTTCAGAAAATGCTCATAAAGCTGAAAGATGGAGGACACAGGGTTCTCATCTTCTCTCAGATGACAAAGATGCTGGATTTGCTGGAGGACTTCCTGGAGTTCGAGGGGTATAAATACGAGCGCATTGACGGGGGCATCACAGGCGGGCTGCGACAGGAGGCCATCGATCGCTTTAACGCACCCGGCGCTCAGCAGTTCTGTTTTCTGCTGTCCACACGTGCTGGAGGATTGGGTATCAATCTGGCAACCGCAGACACAGTAATCATATATGACTCTGACTGGAATCCGCACAATGACATTCAGGCATTCAGCAGGGCGCATCGAATTGGTCAAAATAAAAAGGTGATGATCTATCGCTTTGTAACTCGGGCATCCGTAGAGGAGCGGATCACCCAGGTGGCCAAGCGAAAGATGATGCTGACCCACCTGGTGGTGCGGCCCGGCTTGGGCTCCAAGACGGGCTCTATGTCCAAGCAAGAGCTAGACGACATCCTCAAATTTGGCACTGAAGAGCTTTTTAAAGACGACGTGGAGGCCGCCAGAACGATGGGTGAGCTGAAGGTGTTGGAGATGAAGAGTATTGTACTTCCACTGTGCGTTCCAATAGCTGAAGTCCTAAATCTGTCTTCAACAGGAGACAATAAAGAAGGAGAGGAGGTCAGTGTGATCCACTATGACGATAATGCCATCTCCAAACTTCTGGACCGTAGTCAAGATGCCACCGAAGACACTGAGATCCAGAACATGAACGAGTACCTGAGCTCATTTAAAGTGGCTCAGTATGTCGTGAGAGAAGAGGACGGAGAGgAGGAGGTCCAGAGGGAGATTATTAAGCAGGAGGAGAATGTTGATCCAGACTATTGGGAGAAGCTCTTGAGGCACCATTATGAGCAGCAGCAGGAGGATCTGGCTCGAAACCTGGGCAAGGGGAAACGCATCCGCAAACAGGTCAACTATAATGACGCCTCTCAAGAGGACCAAGAGTGGCAGGACGATCTTTCGGATAATCAGTCTGAGTACTCTGTCGGGtctgaagatgaagatgaagatttTGAGGAACGGCCTGAGGGTGGACGCAGACACTCCCGCAGACAGCTGAAGAGTGATCGGGACAAACCATTGCCGCCACTGCTGGCTAGAGTTAGTGGAAATATAGAGGTTTTGGGATTTAATGCCCGGCAGCGAAAAGCCTTCTTGAATGCGATTATGCGCTGGGGAATGCCTCCGCAAGATGCCTTCAACTCACACTGGCTCGTCCGTGACCTTAGAGGGAAAAGTGAGAAGGAGTTCAGgGCTTACGTGTCTCTGTTCATGAGGCACCTGTGTGAGCCGGGAGCAGATGGAGCAGAGACATTTGCAGATGGAGTCCCAAGGGAAGGCCTGTCCCGCCAGCATGTTCTCACCCGGATCGGTGTCATGTCTCTGGTCCGCAAGAAGGTTCAGGAGTTTGAACATGTGAATGGGAAGTTTAGTACACCAGATCGGATTCCTGTAGGATTAGAGCTGAAAAAACTAACAGAAAGTGTCTCGTCGGATCCAAACACCCCTGTTCCTGCCAGTCCTGTTCCAACTCAACCCAGCACACCGGTTCCTTCAGATAAGACAGAGTCAGTGTCCGGGTCTCAAGAAGATAAGGAGATTGCAGAGCCAGAGAACACCAAACCGCTGGACCCTGAGCCAGTTGTTCCAGAACCCTCTCCTGCGCCAGAAAAGACCAATGAGGGAGAAGAAACAAAAAACGGCAGTCCTGAAGAGAAACGATTGGAGGAGAGCGAGAAAAGTGACACCCCTCCAGTCCAATCAGAGCCATCAGCCAATCAAGCACCGCCACCTACTAAGCAATGTGAGCAGCCAGCCAATCAGACACCTTCAGACTGTGGTAAAGGAAAAGAGACTTCTCCAGAAAGAGGGGAAACTAAACCCAGCCCTCCAAAAACAGAGGATAAGGAACAAAAACCAGCCATTCCTGATGATGTAAAATCTGAAGACCCTCCTGAAAACCAAGTGAATGGAGAGAAAGATGTAAGAGATGAGACGGACGAGGGCCACAGAGATGACAAGAGCAGCATCAAAACTCGCTTCATGTTCAACATTGCAGATGGAGGATTCACAGAGTTGCACACGCTATGGCAGAATGAGGAACGCGCAGCTGTGTCATCTGGCAAAATATACGACATCTGGCATCGTCGCCATGACTACTGGCTGCTGGCTGGCATCGTAACACATGGTTATGCCCGCTGGCAGGACATTCAGAATGACCCACGTTATGCCATCCTCAATGAGCCTTTCAAGACTGAAATGCATAAAGGGAACTACTTAGAAATGAAGAACAAGTTCCTTGCCAGACGCTTTAAGCTACTGGAACAAGCTTTGGTCATCGAGGAGCAGCTCCGGCGTGCGGCGTACCTGAACATGACTCAGGACCCCAGTCATCCTGCCATGGCCCTCAACACACGTTTTGCAGAAGTGGAGTGTCTGGCCGAGTCTCATCAGCACCTCTCCAAAGAGTCTCTGGCTGGTAACAAGCCAGCCAATGCAGTGCTGCACAAAGTGTTAAATCAGCTGGAGGAGTTGTTAAGTGATATGAAGGCGGATGTGACGCGTTTGCCCTCCATGCTTTCGCGGGTGCCACCAGTGTCCGCGCGGCTCCAGATGTCAGAGCGGGGCATCCTCAGCAGACTCACCAGCCGGGGCAATGAGCCGCCACCTCAGCAGCCTTTCCCTCAGGGCTCTTTCGGCTGTTCTCAGATGTATAATAGCAGTTTCGCCGGAGGGTTTCGTGGACCTGGAGGCACCGCCATGGTGAACTATAGCCAGATGCCCCTGGGGCCGTACGTCAGTGtttcctcaaacgggcCTCCTGCCCCTACCAGCCTCCTGGAGAAGAAGTCGAGTGACGTCCTGCGAgatgtggtaacccctgatttaAAATCAGGCAAACCCAGTGATGTTATATGCATCGAGGACTAGCCTGTGGATGCTCCATCCTGTTAATGTACAGTTTAAAACCTACAGACAGAATGCTGGAGGAAGAAATAATAAACAGCGAACCTTATCAGTTGCACTTTTGTCTTTCAGAATCTGTACTTGTACGCGCCTGTAAGTTTTATTCAGTAGATTTAAGTTTCgttcattcttaaaaaaaaaaggaaaaaaaaaacagcgataCAAAAGTGTTAATCGATTAAGGAGAGGCTGAGGACGCTACTGAAAGAGGGCATCATTGTCCTGACAGTCCTCTgagctttgtttttttaattattgttataatttttttacatcatGGCTTCTGTTTCTTAGTGGCCATGAGGGACATTTGGATCTCTGCTAACGCTGAGCCGTCTGGAGGTGCTAGGGGTTTCTGGCCAGCTGAAGGACCTCTGCTTTTGCTCCTGGCTCTGCTCATGAATGATGTGCTGTTGCTGCCCCTGCAGGTTATTGCTGTGTAGTGCATCTAAACACAGAATAGTGCAATGACTGACATATTCTCTGGAAAACCTCAGATGATTTTGCATTGTCACCACTTATGTATGCTTTCAGAACTGTACTAGGTTGTGTTTCCAGTTTACATTACTAGAAAAGGAAAAGAGTGTTGATGAAAGCTAAAGATGCTCCCAGTAATGAAATAATCTTAATAATTAAAAGGTTTTTCCCTCAGTAACACATTTGCTTAGACACAGTGTTGAAATGCCAATCAAAAGCAAGTTTTGTAGTATACAAAATTAACTGTAAGATTTCAAAATTCAAAATTGTCCtttgcacacaaaaaataatgtttttttttaactgcagtgTCTTGCATAACAAATTCAGTACAATCAAAAGTATTAGTAGCCTATTAGAAGCTCAATTTAGAAGGAGCTGGGCTCACTCATGTGAGATCACATGACCTGCATGCCTAATAAATATTCACTAGTACAAAAATATAGCACTTTTGAGtggtcatatacagttgaagaattattagcccccctttcgaattttcttttcttttttaaatatttcccgaacgatccagaaaaacacaaacaaaaagtgctctgGGGTAAGCtcaaatgtatggtcggtgctctttgggtaagggattcatcaaaacagcaacaagaatcagtccaaggcactcgaataaagtggaaaaaaaaaaaacttttttcactttattcgagtgccttggactgattcttgttgctatttcccgaatgatgtttaacagagcatcagacattttcacagtatgtctgataatatttttacttatggagaaagtcttatttgtttaatttggctaaaataaaaacagttttgacaccattttaaggacaaaattattagcccctttaagcaatttttttcgatagtctacagaacaaaccatcgttattaaataacttgcctaattactctgcttagttaacctagttaaacctttacatgtcactttaagcagtatagaaaagtcttgaaaatatctagtgaaatattatttactgtcatcatgacaaatataaataaatcagtaattagaaatgagttattaaaactattttgtttagaaatgtgttgaaaaaatctctccgataaacagaaattagtggaaaaaataaacagggggctaataattcaaaagggttaataattctgacttcaactgtatattgatggCAGTTAGAATGTTTTCATGAACTGTGAGCTGATCAAATTAAGATTAGGATAAATTGTGACACACAATTTGAAaggtatatattttattttaatgcaatgtGAACTTTATTAATGTGCTGTTGAATGCGAAAAAATATTGCGATGTCCCTCAATTTGTAAAACAATAATGCTTTTATAGCAGTTCATTTTGCAAGTGTatacagaaacaaaataaacattaaagtgtATCGCAGTTTTTTACACACTCCATCCACAAaagtagtttgttttgtttgattttacaAAGTGAGGGACCGGCTAAAAGTGCATTCTGTCAGTTAATCAATCAACAGCATGCCTGGAATATTTCTAGAAATGAATTTTTAATTTCTGGAACAGAGCGAGAGCTCAACAGGGATATCTGTGCGACATTTTCACCCTGTTCCATGTTCCTTGATGAGCTCTAATCAGTTTAAATTTGTAAACTTAATtttgtattactattataatCACCATCATATCCTTCTATAGATGCATTTTACTTGACATTTTGTGAATTGCTGAAACTTGGACCCTACAGTAAGTGTGTCGGTTTACTAAGCCGAGCTTATAGATAGTATTGACATGATTGTTCTGGTGCCATAAGTGGTGTGGAGATGGATTGTTTTGTTTCAATTTGAAATGATATGCCTTGTGTTACTGTGTTTTTAAGCAGCGCACTTTATATGGAGATCGGACATGACCATAGAGACGGCCATTTCAAACGCAGTAGAAACCTCTTTTAATAACTTGTATATTCAGTTTCAGTCTGTGGTATTAGTCATGCTAATTAATGTAGATCaagagttttgtttgttttctgcatCTCGGCGGCTGAAGTGTCATGGCTGACCGTAAACGTGATCATAGCTTCTTTTGCAGTAGTTTTATCTTGGGGGTTCAAGACGATGAGGAtgatttttgtgtaaactatgaATGTGgaaaaaatgcagttaaatgtTCACACGCACACGCGCGCTACAGAAACCTCAAATGATTTCAATGAAACGCAAAGACAGTCTTGAGAGTCAAGGGAACTTGTACCCACGAGAGAGAGAGCCAGCAGCATAAAATGTGTTGTGAAAtgaagttttgtttttatcttgtGTGAGGAGTTTACGCCattttcatttgtactttttaatcCGTGTTGATATTGCCATTGCGCTCCATTTAAATGCAATCAAACTGAAGCCAAAATGAATGTATGACGTATTTAAAAAAGCTTCAGTCTAATATTAGAAGTCTTTTCATTCAAGTACAAACTAGGCTTCAAAAGCTACCAAAAGACCCTGGTCAAGACAACTTTGTTGCCATGAACGCACAGCATGTGATTTGTCTTCAGACTACTTTGGACCAGAGAGATCTTTATCCTGGTTTCGAAACATCTACgagcaaaacaaatattgctattTTGCAGAGATAAGAATATGGAAAACATAAGTGAACTACCATCAACTCACTTTGTACTCAGTGtatttgttttatgtgttttaataaaTCCCCTCCAATAAGAGTTAGGCTACGTTTCATTATTTCATTGTTTGCGTCCCATTCAAACGTTTTGGAATAATGGTTTAAAGTCTACATGAACAGGAACCTGcgactgtttttttgtttttgttttgtattgcaaTGTAGTCTcagagaaactgaatattaaatgagtaaacagttgacgtggcttgttttttc

Function

GO:

id name namespace
GO:0043044 ATP-dependent chromatin remodeling biological_process
GO:0048703 embryonic viscerocranium morphogenesis biological_process
GO:0060322 head development biological_process
GO:0005634 nucleus cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005524 ATP binding molecular_function
GO:0046872 metal ion binding molecular_function

KEGG:

id description
ko03036 Chromosome and associated proteins

ZFIN:

id description
ZDB-GENE-120314-2 Predicted to enable several functions, including ATP binding activity; DNA helicase activity; and metal ion binding activity. Acts upstream of or within ATP-dependent chromatin remodeling; embryonic viscerocranium morphogenesis; and head development. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in brain; eye; and testis. Orthologous to human CHD5 (chromodomain helicase DNA binding protein 5).

Ensembl:

ensembl_id ENSDART00000193935

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00008811 lncRNA downstream 29754 29537982 ~ 29544989 (-) True XLOC_004190
TCONS_00008809 lncRNA downstream 254824 29196302 ~ 29319919 (-) False XLOC_004188
TCONS_00008011 lncRNA downstream 254836 29123597 ~ 29319907 (-) False XLOC_004188
TCONS_00008808 lncRNA downstream 254866 29099927 ~ 29319877 (-) False XLOC_004188
TCONS_00008807 lncRNA downstream 254889 29099927 ~ 29319854 (-) False XLOC_004188
TCONS_00008023 lncRNA upstream 29310 29652690 ~ 29657870 (-) True XLOC_004191
TCONS_00008025 lncRNA upstream 111198 29734578 ~ 29737247 (-) True XLOC_004193
TCONS_00008027 lncRNA upstream 136728 29760108 ~ 29762011 (-) True XLOC_004194
TCONS_00008036 lncRNA upstream 294935 29918315 ~ 29921002 (-) False XLOC_004197
TCONS_00008040 lncRNA upstream 337734 29961114 ~ 29961901 (-) True XLOC_004198
TCONS_00008014 mRNA downstream 11306 29331142 ~ 29563437 (-) False XLOC_004189
TCONS_00008015 mRNA downstream 34279 29335300 ~ 29540464 (-) True XLOC_004189
TCONS_00008008 mRNA downstream 492314 28642913 ~ 29082429 (-) False XLOC_004186
TCONS_00008009 mRNA downstream 492568 28643607 ~ 29082175 (-) False XLOC_004186
TCONS_00008010 mRNA downstream 663571 28684668 ~ 28911172 (-) True XLOC_004186
TCONS_00008020 mRNA upstream 26631 29650011 ~ 29658396 (-) False XLOC_004191
TCONS_00008021 mRNA upstream 29076 29652456 ~ 29657947 (-) False XLOC_004191
TCONS_00008024 mRNA upstream 59529 29682909 ~ 29685853 (-) True XLOC_004192
TCONS_00008026 mRNA upstream 133480 29756860 ~ 29768054 (-) False XLOC_004194
TCONS_00008028 mRNA upstream 171775 29795155 ~ 29816429 (-) False XLOC_004195
TCONS_00008006 other downstream 979315 28590888 ~ 28595428 (-) True XLOC_004184
TCONS_00007992 other downstream 1487819 28078148 ~ 28086924 (-) False XLOC_004178
TCONS_00007974 other downstream 1855474 27713464 ~ 27719269 (-) True XLOC_004171
TCONS_00007964 other downstream 2071423 27503232 ~ 27503320 (-) True XLOC_004167
TCONS_00007963 other downstream 2071611 27503017 ~ 27503132 (-) False XLOC_004167
TCONS_00008022 other upstream 29310 29652690 ~ 29657852 (-) False XLOC_004191
TCONS_00008030 other upstream 186317 29809697 ~ 29816202 (-) False XLOC_004195
TCONS_00008033 other upstream 272992 29896372 ~ 29909625 (-) False XLOC_004196
TCONS_00008039 other upstream 321550 29944930 ~ 29946640 (-) True XLOC_004197
TCONS_00008043 other upstream 477762 30101142 ~ 30101257 (-) True XLOC_004200

Expression Profile

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