RNA id: TU356266



Basic Information


Item Value
RNA id TU356266
length 232
lncRNA type inter_gene
GC content 0.54
exon number 2
gene id G300467
representative True

Chromosome Information


Item Value
chromosome id NC_047614.1
NCBI id CM018560.1
chromosome length 21552800
location 1854701 ~ 1857401 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence


TTCTCCAGCTCACGCTTCACTTCTGCCACAGGGGCTGTGGTAGGCTCCGCCTCCTGTGGGGGTGTGGTTTTTAGAGGTAGGGAAGCCTTCACAATGTCACTCCATTTCAGCTCTGGAAGAGCCAGAGGTGCTGATGATGGTGCATCAGAAATGAAAGTGACGGGTTGCTGGTCTTCCTCGATTGGAGGGATGCCGAAAAGGAGCTGACCCGGCCTTCTACAACGCTTTTCCT

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU356239 lncRNA upstream 32362 1820621 ~ 1822339 (+) True G300447
TU355461 lncRNA upstream 214273 1626093 ~ 1640428 (+) True G299916
TU355401 lncRNA upstream 232117 1620800 ~ 1622584 (+) True G299862
XR_004580234.1 lncRNA upstream 250115 1600693 ~ 1604586 (+) True LOC117599906
TU355388 lncRNA upstream 360056 1486450 ~ 1494645 (+) False erc2
TU356290 lncRNA downstream 63126 1920527 ~ 1924467 (+) True G300479
TU356299 lncRNA downstream 86025 1943426 ~ 1944198 (+) True G300487
XR_003403969.2 lncRNA downstream 150209 2007610 ~ 2021578 (+) True LOC113539753
XR_004580183.1 lncRNA downstream 150209 2007610 ~ 2009813 (+) False LOC113539753
TU356296 lncRNA downstream 199004 2056405 ~ 2060641 (+) False mon1a
XM_034314189.1 mRNA upstream 41765 1760864 ~ 1812936 (+) True cacna2d3
XM_034314190.1 mRNA upstream 41765 1763459 ~ 1812936 (+) False cacna2d3
XM_034314186.1 mRNA upstream 102407 1660208 ~ 1752294 (+) False cacna1da
XM_026935298.2 mRNA downstream 21202 1878603 ~ 1920454 (+) True slc38a3a
XM_026935300.2 mRNA downstream 21204 1878605 ~ 1920454 (+) False slc38a3a
XM_034314389.1 mRNA downstream 31910 1889311 ~ 1920454 (+) False slc38a3a
XM_034313997.1 mRNA downstream 68776 1926177 ~ 1977132 (+) True gnai2a
XM_026935221.2 mRNA downstream 136812 1994213 ~ 1998435 (+) False inka1a
TU355411 other upstream 356214 1496860 ~ 1498487 (+) False LOC117599925
TU355413 other upstream 357074 1496860 ~ 1497627 (+) False LOC117599925
TU355179 other upstream 989813 863338 ~ 864888 (+) False fbxo42
TU355161 other upstream 1009890 842980 ~ 844811 (+) False LOC113539702
XR_004580271.1 other upstream 1333814 518567 ~ 520887 (+) False cdkn1a
TU358141 other downstream 2609676 4467077 ~ 4469174 (+) False LOC113539599
XR_003403967.2 other downstream 4806673 6664074 ~ 6779358 (+) False cpne5b
XR_004580199.1 other downstream 6644237 8501638 ~ 8558911 (+) False nfasca
XR_004580200.1 other downstream 6644237 8501638 ~ 8558788 (+) False nfasca
TU362120 other downstream 8655270 10512671 ~ 10513270 (+) True G305515

Expression Profile