Item | Value |
---|---|
RNA id | TU356266 |
length | 232 |
lncRNA type | inter_gene |
GC content | 0.54 |
exon number | 2 |
gene id | G300467 |
representative | True |
Item | Value |
---|---|
chromosome id | NC_047614.1 |
NCBI id | CM018560.1 |
chromosome length | 21552800 |
location | 1854701 ~ 1857401 (+) |
genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
species | striped catfish (Pangasianodon hypophthalmus) |
RNA id | RNA type | direction | distance | location | representative | gene id |
---|---|---|---|---|---|---|
TU356239 | lncRNA | upstream | 32362 | 1820621 ~ 1822339 (+) | True | G300447 |
TU355461 | lncRNA | upstream | 214273 | 1626093 ~ 1640428 (+) | True | G299916 |
TU355401 | lncRNA | upstream | 232117 | 1620800 ~ 1622584 (+) | True | G299862 |
XR_004580234.1 | lncRNA | upstream | 250115 | 1600693 ~ 1604586 (+) | True | LOC117599906 |
TU355388 | lncRNA | upstream | 360056 | 1486450 ~ 1494645 (+) | False | erc2 |
TU356290 | lncRNA | downstream | 63126 | 1920527 ~ 1924467 (+) | True | G300479 |
TU356299 | lncRNA | downstream | 86025 | 1943426 ~ 1944198 (+) | True | G300487 |
XR_003403969.2 | lncRNA | downstream | 150209 | 2007610 ~ 2021578 (+) | True | LOC113539753 |
XR_004580183.1 | lncRNA | downstream | 150209 | 2007610 ~ 2009813 (+) | False | LOC113539753 |
TU356296 | lncRNA | downstream | 199004 | 2056405 ~ 2060641 (+) | False | mon1a |
XM_034314189.1 | mRNA | upstream | 41765 | 1760864 ~ 1812936 (+) | True | cacna2d3 |
XM_034314190.1 | mRNA | upstream | 41765 | 1763459 ~ 1812936 (+) | False | cacna2d3 |
XM_034314186.1 | mRNA | upstream | 102407 | 1660208 ~ 1752294 (+) | False | cacna1da |
XM_026935298.2 | mRNA | downstream | 21202 | 1878603 ~ 1920454 (+) | True | slc38a3a |
XM_026935300.2 | mRNA | downstream | 21204 | 1878605 ~ 1920454 (+) | False | slc38a3a |
XM_034314389.1 | mRNA | downstream | 31910 | 1889311 ~ 1920454 (+) | False | slc38a3a |
XM_034313997.1 | mRNA | downstream | 68776 | 1926177 ~ 1977132 (+) | True | gnai2a |
XM_026935221.2 | mRNA | downstream | 136812 | 1994213 ~ 1998435 (+) | False | inka1a |
TU355411 | other | upstream | 356214 | 1496860 ~ 1498487 (+) | False | LOC117599925 |
TU355413 | other | upstream | 357074 | 1496860 ~ 1497627 (+) | False | LOC117599925 |
TU355179 | other | upstream | 989813 | 863338 ~ 864888 (+) | False | fbxo42 |
TU355161 | other | upstream | 1009890 | 842980 ~ 844811 (+) | False | LOC113539702 |
XR_004580271.1 | other | upstream | 1333814 | 518567 ~ 520887 (+) | False | cdkn1a |
TU358141 | other | downstream | 2609676 | 4467077 ~ 4469174 (+) | False | LOC113539599 |
XR_003403967.2 | other | downstream | 4806673 | 6664074 ~ 6779358 (+) | False | cpne5b |
XR_004580199.1 | other | downstream | 6644237 | 8501638 ~ 8558911 (+) | False | nfasca |
XR_004580200.1 | other | downstream | 6644237 | 8501638 ~ 8558788 (+) | False | nfasca |
TU362120 | other | downstream | 8655270 | 10512671 ~ 10513270 (+) | True | G305515 |