RNA id: TU356296


Basic Information

Item Value
RNA id TU356296
length 3788
lncRNA type sense_over
GC content 0.38
exon number 2
gene id mon1a
representative False

Chromosome Information

Item Value
chromosome id NC_047614.1
NCBI id CM018560.1
chromosome length 21552800
location 2053083 ~ 2060641 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

aaaaaagataaaaattaaaaatagatttgGTCCACTGACGGTGTCTGTACTTGCCGTTAGCCCGGAGCTGCCGGTGCCGTATCGCACTGAAGACGAGCAGGAGAGGCTCATGGAGTTGTACCAGTACCTCCACAGTCGCCTGCACCACCCGACACGACCCCTGCGCTCCATCTACCGCTGCACAAACACCGAGAACCTGCTCGCCTGGtcAACCAGCGGCTTCGAGCTCTACCTCTGCTTCAGTCCTCTGGCCACCAAAGCTCTGGCCATGTCGGCCGTCAGCAAACTGCTGAAGTGGATCAGGAAGGAGGAGGACCGTCTCTTTATCCTCAACTCGCTCACGTACTGAGACCGATCCCTGATTCCTGATCCGGAGGACGGGAGAGAGCACGCCTGACGCCTCTAGACCACCGACACTGTGCTGGAGCTGCTGTCGGGATCTTCCGGCCCTCGTGGGGAGGGATGCGCGGGAGCCATTTCAATTCACTGAACAGAGTAAAGTGAGCTGTACGAGACTCGGATCTTTATCACCACACCTCAGTGAccgtattaaaaaaaaaacacacaacaacaggATATTGTCTACACAGCAcctcaaaaaacaaaacaaaaaacaaaacaaaaaaaaccccaaaaacaaaaacactaacaTGCCATTAAAGGGGCCGTGTGTAATATTTTAGTACTTTTAAACTTCTCATAAATTAGGGCTACACTGTTGACGGAAGGGTTCTCGGTTGGTTACTAGttgtacacttttaaaaataaaggtgcTTTTTAGAGCAAGAACCATTTTGGTTCCTTAGAGAACCTTTCAGCTTCTGATTCttttgtcatttcttttcttgttgCCATAAATACGGAAAAAGATGATCCTTTTCCACCACTAAATCTTTCCTTGTAAAGCTAACATTAatggtggaatttttttttagttctctgTGGAACCAACAAAAATGATGAATGGTCCATCGATCCAAAAgttctttaaaactttaaaaatgctaGTCTTTCTAGCATTtctttaaatcatgttttttgcCACCTTTATTTTAAAGAGTGTAAGTAGtgccatttctttctttacttcaAGAACGATATGCAGGTTCCTTCAGGctccaaaggtttttttttgtttgtttgtttgttttttgaaagcTCAAAACTTTATGGATTCCACGATTGTTTTGTTGCGTCAGTACGTTTCTATGTGGAAATCTTTCTGAATGGCTTCTGCTTGGAAACTTATCtgaaaggttctatgtagaaaaAAAGCTGCCAGGGTTCTTTCATTTGTTCCTCTGGGAGAAGGCTTGGATGTTCTGAGAGTGGAAAGTAGCTGAGCAAGGATATTGCGGCCTCGGAGTGAAGTTAGTGCTTCAAATTTAGAGATTCTTAAAAAGTACAAGATACGAGAAACAAGCAGTTCTCTGTGGAGCTGTACGCTAACGGTAGCGCTAGTTAAAGATGTGTTTAGAGATTTATTTTGTTGCAAGTTTATTTCACAGAATTGATTGTGGCTTTAAAGGAGAAAATCGTCCGAACGCAGAATGACGTCAATCAGTCACATGTTTGATGATTTGCACTGGAGCTAATCTTAATGTAGCTAACgaatcatacttttttttttttaaactaattatcCACCTCAGACCACATCCAGTTCATTAATAAcgtgctgatgtggtttaggacataaacaggaacaaaacagtcttttttccccctctctatTCTCCGCCTGTAAACTGATCAAATAGTTCCATTTGTACTTCagattgtaaatgtaaatatgtgttttgtttatttaaaaacattattacgTAGCTTCAGCTTAGCATGAAGCAAATCTGATCTAGACATTTAAGTCATGGCTGACTGTGTTTGAGGGAAGTGGGGAAATTGTTATAAATCGGATTTTTCATGAAGCTGTTCGTTTAACGGTGATGTGTAACGCCGCTGCCTCGCCACAACTAAACTCAATATCTCacctttgccttttttttaaattttttttttaaagacctgTCACTGTTCTGACCTGCACTGACATATCAAAACGGTTTTTTAACGTGACATAACGTTAGAACTTAACGTGACATTTCTGAGAGATGTTTCCGTTTCCGTGAGTCGCCATAACTCAATAACTCAACATAAAGATGAAAAAACTTCTTCATATTGCAGTTTACTGAAACGCAACCGGTGCAGGCCTGAAACGAACGGTTAAAAAAATCAACCTGCTTTACTTGAACCTGCTAgtaaatgatttttgtttgaTGGTGTGAACGGCAATAAGACATCGAAGGCTTGCTAAGAGAGCTCATTTGCATAGTGCATATTAATATACACTGCAGCGCTGCTTTAATAATGATCTTTACCCATAAAATGTTTGAGTTCCTCGTATTAGAGGTGCGGGTTGTAGTGTTTAAACGTGTTTCTAGACCTCTAATAAACATCCGCTTCTAAAGACACTTTGGAAAAACTGTCATTGCGATATTGTTTCTCAACAGATCTGGCtagtttctttgtttcaggGTTCaggttctgttttgtttctggGCTGGAAATTAACTCCGCCCCTCCCCAGTCAGAACAGTTTCAACAATGGGCTTACTGCCCCTTTAAATGAACATTCCCTCCCAAACATGTACTATTAGGATCCTTCGATTCGGTTTAATGACCAGCAACACTGACAAGCGCTAATCTGAACGCTAGCTTGAGGATGGTAGGTGTTAggatgtatgtattttttttaaatcgataATGGTTGATGTTATTCAATTTAATTGATGGAACATGATTAAGATCTTAAAAGAGCTTGCTGTTGGGGGAATTCTGGACTTTAGCTGATATTCGATGTGTAAATATCTGATGTTGATACACGTGCGATTATAAAATTACGATTCAGACCTgaagaatttaaatatttttagacGGTTAAGGATTTTAAGCAATTAAAGAATTGCAACATCTGAGTGGATAAATGACCTTAATGCTAAATCTTCCTTAAATAACATTCCTGTTAAGATTTATTTTTCGTAATTTAAATGAACTGTGATTAGAAGCCTACAAAGATACAATTAGGTTAAAGTAGCATTGTGTAAATGTTCTGCAATAAATTCGTTTAAATCAGTTATCTGTCAAATCTATGCACTGTTCCGatgcaaataataattattattactatttttttgcatttgtctgCCAGTAATGATAAAATTCCAATAAGAAGTTAAGGTATGTTGGCGTTTATTTGGAAACAAGCTTGTGTAAATTGTTTATTTCCTCATGTACATGATCACAGCGAACACTAAGACATTCGCACATCGCCGCCTTCTGCGTATATCAGTATTGCGGTAACGGCTAGCAGTCGATATATTGCGCATTCTCAGGTAGTGCATTTCATCTTCTTACAGGAAGTCATGTCCAATCTCGCCTTTACCTAACATCGTAATGTGTATGGTGCTGTGATTAGCTGCTCTGGGATCTGAATTTATTAGACATGTGCTGAATTACTGACACTGATTATCTCTTGGTATGacaatgaatgatgaatgagtCAGTtccactatatatacacacacacacacacacatatattatattatatacatacacacactactgtgcaaaagtcttaggcacatccaaaaaaatgctatagagcaaagatgccttcaaaaataatgaaattaaatgtttctacattaaaaaatactataaagagcagtaaacagtaataaacaaagaaactgaaacaaagtcaatttttaatgtgacgatccttc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_003403969.2 lncRNA upstream 34827 2007610 ~ 2021578 (+) True LOC113539753
XR_004580183.1 lncRNA upstream 46592 2007610 ~ 2009813 (+) False LOC113539753
TU356299 lncRNA upstream 112207 1943426 ~ 1944198 (+) True G300487
TU356290 lncRNA upstream 131938 1920527 ~ 1924467 (+) True G300479
TU356266 lncRNA upstream 199004 1854701 ~ 1857401 (+) True G300467
TU356488 lncRNA downstream 127825 2188466 ~ 2188913 (+) False camkvb
TU356498 lncRNA downstream 133647 2194288 ~ 2195719 (+) True G300649
XR_004580170.1 lncRNA downstream 259406 2320047 ~ 2325625 (+) True LOC117599869
TU356537 lncRNA downstream 293203 2353844 ~ 2354096 (+) True G300688
TU356538 lncRNA downstream 294392 2355033 ~ 2355245 (+) True G300689
XM_026935221.2 mRNA upstream 57970 1994213 ~ 1998435 (+) False inka1a
XM_026935222.2 mRNA upstream 57970 1994502 ~ 1998435 (+) True inka1a
XM_026935223.2 mRNA upstream 57970 1995999 ~ 1998435 (+) False inka1a
XM_034313997.1 mRNA upstream 79273 1926177 ~ 1977132 (+) True gnai2a
XM_034314389.1 mRNA upstream 135951 1889311 ~ 1920454 (+) False slc38a3a
XM_026935396.2 mRNA downstream 2203 2062844 ~ 2088852 (+) True mst1rb
XM_034314198.1 mRNA downstream 80881 2141522 ~ 2188917 (+) False camkvb
XM_026935792.2 mRNA downstream 82975 2143616 ~ 2188917 (+) True camkvb
XM_026935167.2 mRNA downstream 466078 2526719 ~ 2568406 (+) True LOC113539428
XM_026935761.2 mRNA downstream 517733 2578374 ~ 2607935 (+) True grm2b
TU355411 other upstream 557918 1496860 ~ 1498487 (+) False LOC117599925
TU355413 other upstream 558778 1496860 ~ 1497627 (+) False LOC117599925
TU355179 other upstream 1191517 863338 ~ 864888 (+) False fbxo42
TU355161 other upstream 1211594 842980 ~ 844811 (+) False LOC113539702
XR_004580271.1 other upstream 1535518 518567 ~ 520887 (+) False cdkn1a
TU358141 other downstream 2406436 4467077 ~ 4469174 (+) False LOC113539599
XR_003403967.2 other downstream 4603433 6664074 ~ 6779358 (+) False cpne5b
XR_004580199.1 other downstream 6440997 8501638 ~ 8558911 (+) False nfasca
XR_004580200.1 other downstream 6440997 8501638 ~ 8558788 (+) False nfasca
TU362120 other downstream 8452030 10512671 ~ 10513270 (+) True G305515

Expression Profile