Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU356299 |
| length | 646 |
| lncRNA type | intronic |
| GC content | 0.48 |
| exon number | 3 |
| gene id | G300487 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_047614.1 |
| NCBI id | CM018560.1 |
| chromosome length | 21552800 |
| location | 1943426 ~ 1944198 (+) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU356290 | lncRNA | upstream | 18959 | 1920527 ~ 1924467 (+) | True | G300479 |
| TU356266 | lncRNA | upstream | 86025 | 1854701 ~ 1857401 (+) | True | G300467 |
| TU356239 | lncRNA | upstream | 121087 | 1820621 ~ 1822339 (+) | True | G300447 |
| TU355461 | lncRNA | upstream | 302998 | 1626093 ~ 1640428 (+) | True | G299916 |
| TU355401 | lncRNA | upstream | 320842 | 1620800 ~ 1622584 (+) | True | G299862 |
| XR_003403969.2 | lncRNA | downstream | 63412 | 2007610 ~ 2021578 (+) | True | LOC113539753 |
| XR_004580183.1 | lncRNA | downstream | 63412 | 2007610 ~ 2009813 (+) | False | LOC113539753 |
| TU356296 | lncRNA | downstream | 112207 | 2056405 ~ 2060641 (+) | False | mon1a |
| TU356488 | lncRNA | downstream | 244268 | 2188466 ~ 2188913 (+) | False | camkvb |
| TU356498 | lncRNA | downstream | 250090 | 2194288 ~ 2195719 (+) | True | G300649 |
| XM_026935298.2 | mRNA | upstream | 22972 | 1878603 ~ 1920454 (+) | True | slc38a3a |
| XM_026935300.2 | mRNA | upstream | 22972 | 1878605 ~ 1920454 (+) | False | slc38a3a |
| XM_034314389.1 | mRNA | upstream | 22972 | 1889311 ~ 1920454 (+) | False | slc38a3a |
| XM_034314189.1 | mRNA | upstream | 130490 | 1760864 ~ 1812936 (+) | True | cacna2d3 |
| XM_026935221.2 | mRNA | downstream | 50015 | 1994213 ~ 1998435 (+) | False | inka1a |
| XM_026935222.2 | mRNA | downstream | 50304 | 1994502 ~ 1998435 (+) | True | inka1a |
| XM_026935223.2 | mRNA | downstream | 51801 | 1995999 ~ 1998435 (+) | False | inka1a |
| XM_034314432.1 | mRNA | downstream | 108885 | 2053083 ~ 2059985 (+) | True | mon1a |
| XM_034314431.1 | mRNA | downstream | 108885 | 2053083 ~ 2056606 (+) | False | mon1a |
| TU355411 | other | upstream | 444939 | 1496860 ~ 1498487 (+) | False | LOC117599925 |
| TU355413 | other | upstream | 445799 | 1496860 ~ 1497627 (+) | False | LOC117599925 |
| TU355179 | other | upstream | 1078538 | 863338 ~ 864888 (+) | False | fbxo42 |
| TU355161 | other | upstream | 1098615 | 842980 ~ 844811 (+) | False | LOC113539702 |
| XR_004580271.1 | other | upstream | 1422539 | 518567 ~ 520887 (+) | False | cdkn1a |
| TU358141 | other | downstream | 2522879 | 4467077 ~ 4469174 (+) | False | LOC113539599 |
| XR_003403967.2 | other | downstream | 4719876 | 6664074 ~ 6779358 (+) | False | cpne5b |
| XR_004580199.1 | other | downstream | 6557440 | 8501638 ~ 8558911 (+) | False | nfasca |
| XR_004580200.1 | other | downstream | 6557440 | 8501638 ~ 8558788 (+) | False | nfasca |
| TU362120 | other | downstream | 8568473 | 10512671 ~ 10513270 (+) | True | G305515 |
